| Sequence ID | Eco_1 |
|---|---|
| Location | 2,735,669 – 2,735,767 |
| Length | 98 |
| Max. P | 0.964473 |
| Location | 2,735,669 – 2,735,767 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 92.57 |
| Mean single sequence MFE | -31.63 |
| Consensus MFE | -27.89 |
| Energy contribution | -28.00 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.99 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.956116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 2735669 98 + 1 AUGGGAGGCGUUUCGUCGUGUGAAACAGAAUGCGAAGACGAACAAUAAGGCCUCCCAAAUCGGGGGGCCUUUUUUAUUGAUAACAAAAA-GGCAACACU .((((((((.(((((((((((........))))...))))).....)).))))))))......(..((((((((..........)))))-)))..)... ( -32.30) >Sfl_1 1 98 + 1 AUGGGAGGCGUUUCGUCGUGUGAAACAGAAUGCGAAGACGAACAAUAAGGCCUCCCAAAUCGGGGGGCCUUUUUUAUUGAUAACAAAAA-GGCAACACU .((((((((.(((((((((((........))))...))))).....)).))))))))......(..((((((((..........)))))-)))..)... ( -32.30) >Sty_1 1 97 + 1 --GGGAGGCGUUUCGUCAUGUGAUAAAGAAUGCGAAGACGAACAAGAAGGCCUCCCCCACCGGGAGGCCUUUUUUAUUGAUAACAAAAAAGGCAACACU --.....((((((.(((....)))...)))))).....(((..(((((((((((((.....)))))))))))))..)))...........(....)... ( -30.30) >consensus AUGGGAGGCGUUUCGUCGUGUGAAACAGAAUGCGAAGACGAACAAUAAGGCCUCCCAAAUCGGGGGGCCUUUUUUAUUGAUAACAAAAA_GGCAACACU .......((..((((((.(((..........)))..))))))((((((((((((((.....))))))))))....))))............))...... (-27.89 = -28.00 + 0.11)
| Location | 2,735,669 – 2,735,767 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 92.57 |
| Mean single sequence MFE | -28.88 |
| Consensus MFE | -26.24 |
| Energy contribution | -26.24 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.79 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.964473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 2735669 98 - 1 AGUGUUGCC-UUUUUGUUAUCAAUAAAAAAGGCCCCCCGAUUUGGGAGGCCUUAUUGUUCGUCUUCGCAUUCUGUUUCACACGACGAAACGCCUCCCAU ......(((-(((((..........)))))))).........((((((((.......((((((...................))))))..)))))))). ( -28.31) >Sfl_1 1 98 - 1 AGUGUUGCC-UUUUUGUUAUCAAUAAAAAAGGCCCCCCGAUUUGGGAGGCCUUAUUGUUCGUCUUCGCAUUCUGUUUCACACGACGAAACGCCUCCCAU ......(((-(((((..........)))))))).........((((((((.......((((((...................))))))..)))))))). ( -28.31) >Sty_1 1 97 - 1 AGUGUUGCCUUUUUUGUUAUCAAUAAAAAAGGCCUCCCGGUGGGGGAGGCCUUCUUGUUCGUCUUCGCAUUCUUUAUCACAUGACGAAACGCCUCCC-- .(.(..(((((((((((.....)))))))))))..).).....(((((((.......((((((...................))))))..)))))))-- ( -30.01) >consensus AGUGUUGCC_UUUUUGUUAUCAAUAAAAAAGGCCCCCCGAUUUGGGAGGCCUUAUUGUUCGUCUUCGCAUUCUGUUUCACACGACGAAACGCCUCCCAU ......(((.(((((((.....))))))).)))..........(((((((.......((((((...................))))))..))))))).. (-26.24 = -26.24 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:04:25 2006