Locus 5

Sequence ID Eco_1
Location 226,304 – 226,424
Length 120
Max. P 0.755195
window6

overview

Window 6

Location 226,304 – 226,424
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.72
Mean single sequence MFE -28.42
Consensus MFE -23.43
Energy contribution -23.24
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -2.07
Structure conservation index 0.82
SVM decision value 0.49
SVM RNA-class probability 0.755195
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 226304 120 - 1
CUGUCCAAUCAAUUUACCUUAGAGCCACGGCAGGGGCCCUGCCCAUCCACACCCUGCUCUUGAAUCAAUCCUCUCCGCGAUUGUUUACAGGUUUAAUAACACAUAAACGAUCAACCGGAU
..((((...............((..((.(((((((................)))))).).))..))............(((((((((...(((....)))...)))))))))....)))) ( -28.19)
>Sfl_1 559 120 - 1
CUGUCCAAUCAAUUUACCUUAGAGCCACGGCAGGGGCCCUGCCCAUCCACACCCUGCUCUUGAAUCAAUCCUCUCCGCGAUUGUUUACAGGUUUAAUAACACAUAAACGAUCAACCGGAU
..((((...............((..((.(((((((................)))))).).))..))............(((((((((...(((....)))...)))))))))....)))) ( -28.19)
>Sty_1 561 120 - 1
CUGACCAAUCAGUUUACCUUAGAGCCACGGCAGGGGCCCAGCCCAUCCACACCCUGCUCUUGAAUCAAUCGUCUCCGCGAUUGUUUACAGGUUUAAUAACACAUAAACGAUCAACGAGAU
((((....)))).........((..((.(((((((................)))))).).))..))....(((((...(((((((((...(((....)))...)))))))))...))))) ( -29.79)
>Ype_1 558 120 - 1
CUGUCCAAUCAAGUUACCUAAGAGCCACGGCAGGGGCCCAGCCCAUCCACACUCUGCUCUUGAAUCAAUCCUCUCCGCGAUUGUUUACAGGUUUAAUAACACAUAAACGAUCAACACAGU
((((....(((((.......((((....((...((((...))))..))...))))...)))))...............(((((((((...(((....)))...)))))))))...)))). ( -27.50)
>consensus
CUGUCCAAUCAAUUUACCUUAGAGCCACGGCAGGGGCCCAGCCCAUCCACACCCUGCUCUUGAAUCAAUCCUCUCCGCGAUUGUUUACAGGUUUAAUAACACAUAAACGAUCAACCGGAU
.....................((..((.(((((((................)))))).).))..))............(((((((((...(((....)))...)))))))))........ (-23.43 = -23.24 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:09:46 2006