Locus 49

Sequence ID Eco_1
Location 4,638,566 – 4,638,686
Length 120
Max. P 0.858968
window67

overview

Window 7

Location 4,638,566 – 4,638,686
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -35.37
Consensus MFE -30.75
Energy contribution -31.20
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.60
Structure conservation index 0.87
SVM decision value 0.82
SVM RNA-class probability 0.858968
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4638566 120 - 1
CCAGUCACUUUUUGACUGGCUAGGUAUGUAAAUGCGUUCAUCGCGUAUGUCCAAUACCUAGGAUUAACAAUGGGGUAUCAUAGAUAAAUGUUCUUUCUGAUACAGGCAGCUUCGUAGCAA
(((((((.....)))))))((((((((....((((((.....)))))).....)))))))).............((((((.(((.......)))...)))))).....(((....))).. ( -35.70)
>Sfl_1 1 120 - 1
CCAGUCACUUUUUGACUGGCUAGGUAUGUAAAUGCGUUCAUCGCGUAUGUCCAAUACCUAGGAUUAACAAUGGGGUAUCAUAGAUAAAUGUUCUUUCUGAUACAGGCAGCUUCGUAGCAA
(((((((.....)))))))((((((((....((((((.....)))))).....)))))))).............((((((.(((.......)))...)))))).....(((....))).. ( -35.70)
>Sty_1 1 120 - 1
GCAGUCUCUUUUUGACUGGCUAGAUAUGUAAAUGCGUUCAUCGCGUAUGUCCAAUACCUAGGAUUAACAAUGGGGUAUCAUAGAUAAAUGUUCUUUUUGAUACAGGACGUUUCGUAGCAA
.(((((.......)))))((((((.......(((((.....)))))((((((....((((..........))))((((((.(((.......)))...)))))).)))))).)).)))).. ( -34.70)
>consensus
CCAGUCACUUUUUGACUGGCUAGGUAUGUAAAUGCGUUCAUCGCGUAUGUCCAAUACCUAGGAUUAACAAUGGGGUAUCAUAGAUAAAUGUUCUUUCUGAUACAGGCAGCUUCGUAGCAA
((((((.......))))))((((((((....((((((.....)))))).....)))))))).............((((((.(((.......)))...)))))).....(((....))).. (-30.75 = -31.20 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:13:27 2006