Locus 48

Sequence ID Eco_1
Location 4,604,354 – 4,604,430
Length 76
Max. P 0.721433
window66

overview

Window 6

Location 4,604,354 – 4,604,430
Length 76
Sequences 4
Columns 76
Reading direction forward
Mean pairwise identity 93.60
Mean single sequence MFE -13.30
Consensus MFE -12.35
Energy contribution -12.41
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -1.51
Structure conservation index 0.93
SVM decision value 0.40
SVM RNA-class probability 0.721433
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4604354 76 + 1
AACGCCGCUAGAACCACCCACCGUCCCUAUCGUAACUGUCUAGCACGCUGAGUCUACCACGUACGACUCCAAUCAC
...((.((((((.........((.......))......))))))..)).((((((((...))).)))))....... ( -13.96)
>Sfl_1 1 73 + 1
AACGCCGCUAGAACCACCCACCGUCCCUAUCGUAACUGUCUAGCACGCUGAGUCUACCACGUACGACUCCAAU---
...((.((((((.........((.......))......))))))..)).((((((((...))).)))))....--- ( -13.96)
>Sty_1 1 71 + 1
AACGCCGCUAGAACCACCCACCGUCCCUAUCGUAACUGUCUAGCACGCUGAGUCUACCACGUACGACUCCA-----
...((.((((((.........((.......))......))))))..)).((((((((...))).)))))..----- ( -13.96)
>Ype_1 1 76 + 1
AACGCCGCUAAAACCACCCACCGACCCUAUCGUAACUGUCUAGCACGCUGAGUCUACCACGUACGAUUCCAGUCAC
......................(((...((((((..((..(((.((.....))))).))..))))))....))).. ( -11.30)
>consensus
AACGCCGCUAGAACCACCCACCGUCCCUAUCGUAACUGUCUAGCACGCUGAGUCUACCACGUACGACUCCAAU___
...((.((((((.........((.......))......))))))..)).((((((((...))).)))))....... (-12.35 = -12.41 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:13:24 2006