Sequence ID | Eco_1 |
---|---|
Location | 4,604,354 – 4,604,430 |
Length | 76 |
Max. P | 0.721433 |
Location | 4,604,354 – 4,604,430 |
---|---|
Length | 76 |
Sequences | 4 |
Columns | 76 |
Reading direction | forward |
Mean pairwise identity | 93.60 |
Mean single sequence MFE | -13.30 |
Consensus MFE | -12.35 |
Energy contribution | -12.41 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -1.51 |
Structure conservation index | 0.93 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721433 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4604354 76 + 1 AACGCCGCUAGAACCACCCACCGUCCCUAUCGUAACUGUCUAGCACGCUGAGUCUACCACGUACGACUCCAAUCAC ...((.((((((.........((.......))......))))))..)).((((((((...))).)))))....... ( -13.96) >Sfl_1 1 73 + 1 AACGCCGCUAGAACCACCCACCGUCCCUAUCGUAACUGUCUAGCACGCUGAGUCUACCACGUACGACUCCAAU--- ...((.((((((.........((.......))......))))))..)).((((((((...))).)))))....--- ( -13.96) >Sty_1 1 71 + 1 AACGCCGCUAGAACCACCCACCGUCCCUAUCGUAACUGUCUAGCACGCUGAGUCUACCACGUACGACUCCA----- ...((.((((((.........((.......))......))))))..)).((((((((...))).)))))..----- ( -13.96) >Ype_1 1 76 + 1 AACGCCGCUAAAACCACCCACCGACCCUAUCGUAACUGUCUAGCACGCUGAGUCUACCACGUACGAUUCCAGUCAC ......................(((...((((((..((..(((.((.....))))).))..))))))....))).. ( -11.30) >consensus AACGCCGCUAGAACCACCCACCGUCCCUAUCGUAACUGUCUAGCACGCUGAGUCUACCACGUACGACUCCAAU___ ...((.((((((.........((.......))......))))))..)).((((((((...))).)))))....... (-12.35 = -12.41 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:13:24 2006