Locus 47

Sequence ID Eco_1
Location 4,604,232 – 4,604,352
Length 120
Max. P 0.761260
window65

overview

Window 5

Location 4,604,232 – 4,604,352
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -46.13
Consensus MFE -45.80
Energy contribution -45.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.99
SVM decision value 0.50
SVM RNA-class probability 0.761260
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4604232 120 + 1
UUCUAACCGAACAACUCCAGUGCGCCCAAGGGCGGUAUGUGGAAGGACUUUUACACGCCGCGCCCAAAGCCGAAUCAGGACCGGCGAAUGGCCGGGCUCACGAUUGUUGGUGUUGACCCU
.((..(((.(((((.((..(((.((((....((((..(((((((....)))))))..))))(((....((((.........))))....))).)))).)))))))))))))...)).... ( -46.40)
>Sfl_1 161 120 + 1
UUCUAACCGAACAACUCCAGUGCGCCCAAGGGCGGUAUGUGGAAGGACUUUUACACGCCGCGCCCAAAGCCGAAUCAGGACCGGCGAAUGGCCGGGCUCACAAUUGUUGGUGUUGACCCU
...........((((.((((((.((((....((((..(((((((....)))))))..))))(((....((((.........))))....))).)))).)))......))).))))..... ( -45.80)
>Sty_1 112 119 + 1
UUCUAACCGAACAACUCCAGUGCGCCCAAGGGCGGUAUGUGGAAGGACUUUUACACGCCGCGCCCAAAGCCGAAUCAGGACCGGCGAAUGGCCGGGCUCACGAUUG-UGGUGUUGACCCU
...........((((.((((((.((((....((((..(((((((....)))))))..))))(((....((((.........))))....))).)))).))).....-))).))))..... ( -46.20)
>consensus
UUCUAACCGAACAACUCCAGUGCGCCCAAGGGCGGUAUGUGGAAGGACUUUUACACGCCGCGCCCAAAGCCGAAUCAGGACCGGCGAAUGGCCGGGCUCACGAUUGUUGGUGUUGACCCU
...........((((.((((((.((((....((((..(((((((....)))))))..))))(((....((((.........))))....))).)))).)))......))).))))..... (-45.80 = -45.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:13:19 2006