Locus 46

Sequence ID Eco_1
Location 4,494,393 – 4,494,513
Length 120
Max. P 0.583536
window64

overview

Window 4

Location 4,494,393 – 4,494,513
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -35.20
Consensus MFE -35.20
Energy contribution -35.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 1.00
SVM decision value 0.10
SVM RNA-class probability 0.583536
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4494393 120 + 1
ACUACGACUGGCCGUUCCCACGCAUCAGUGCGUCUCACUUAGAGGACGAGCGCUGGACCAUUAACCUAAUGAUCGCGAUGGGAAAUUACUCACCUUACUAACUGAAGUUACGGUACUGAC
..........(((((((((((((..((((((.((((.....))))....))))))((.(((((...))))).))))).))))))..............((((....))))))))...... ( -35.20)
>Sfl_1 25 120 + 1
ACUACGACUGGCCGUUCCCACGCAUCAGUGCGUCUCACUUAGAGGACGAGCGCUGGACCAUUAACCUAAUGAUCGCGAUGGGAAAUUACUCACCUUACUAACUGAAGUUACGGUACUGAC
..........(((((((((((((..((((((.((((.....))))....))))))((.(((((...))))).))))).))))))..............((((....))))))))...... ( -35.20)
>Sty_1 25 120 + 1
ACUACGACUGGCCGUUCCCACGCAUCAGUGCGUCUCACUUAGAGGACGAGCGCUGGACCAUUAACCUAAUGAUCGCGAUGGGAAAUUACUCACCUUACUAACUGAAGUUACGGUACUGAC
..........(((((((((((((..((((((.((((.....))))....))))))((.(((((...))))).))))).))))))..............((((....))))))))...... ( -35.20)
>consensus
ACUACGACUGGCCGUUCCCACGCAUCAGUGCGUCUCACUUAGAGGACGAGCGCUGGACCAUUAACCUAAUGAUCGCGAUGGGAAAUUACUCACCUUACUAACUGAAGUUACGGUACUGAC
..........(((((((((((((..((((((.((((.....))))....))))))((.(((((...))))).))))).))))))..............((((....))))))))...... (-35.20 = -35.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:13:15 2006