Locus 43

Sequence ID Eco_1
Location 4,390,381 – 4,390,461
Length 80
Max. P 0.939531
window60

overview

Window 0

Location 4,390,381 – 4,390,461
Length 80
Sequences 6
Columns 80
Reading direction forward
Mean pairwise identity 96.33
Mean single sequence MFE -27.77
Consensus MFE -28.18
Energy contribution -27.93
Covariance contribution -0.25
Combinations/Pair 1.09
Mean z-score -0.89
Structure conservation index 1.01
SVM decision value 1.28
SVM RNA-class probability 0.939531
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4390381 80 + 1
ACAAGGCGUAUAUGCUGGUGGCUUAUCGGGCCUGGAUGCGAGCCCGAACUAGUCUCAGCACUGGGGGACAUCGUACCUCC
............((((((.((((..((((((.((....)).))))))...))))))))))..(((((........))))) ( -29.50)
>Hin_1 1 78 + 1
--AAGGCGUAUAUGCUGGUGGCUUAUCGGGCCUGGAUGCGAGCCCGAACUAGUCUCAGCACCGGGGGACAUCGUACCUCC
--..........((((((.((((..((((((.((....)).))))))...))))))))))..(((((........))))) ( -29.80)
>Lpn_1 1 80 + 1
ACAAGGCGUAUAUGCUGGUGGCUUAUCGAACCUGGAUGCGAGCUUGAACUAGUCUCAGCACUGGGGGACAUCGUACCUCC
....((((....))))((.((.....(((.((..(.((((((((......)).))).))))..)).....)))..)).)) ( -18.80)
>Sfl_1 1 80 + 1
AAAAGGCGUAUAUGCUGGUGGCUUAUCGGGCCUGGAUGCGAGCCCGAACUAGUCUCAGCACUGGGGGACAUCGUACCUCC
............((((((.((((..((((((.((....)).))))))...))))))))))..(((((........))))) ( -29.50)
>Sty_1 1 78 + 1
--AAGGCGUAUAUGCUGGUGGCUUAUCGGGCCUGGAUGCGAGCCCGAACUAGUCUCAGCACUGGGGGACAUCGUACCUCC
--..........((((((.((((..((((((.((....)).))))))...))))))))))..(((((........))))) ( -29.50)
>Ype_1 1 80 + 1
ACAAGGCGUAUAUGCUGGUGGCUUAUCGGGCCUGGAUGCGAGCCCGAACUAGUCUCAGCACUGGGGGACAUCGUACCUCC
............((((((.((((..((((((.((....)).))))))...))))))))))..(((((........))))) ( -29.50)
>consensus
ACAAGGCGUAUAUGCUGGUGGCUUAUCGGGCCUGGAUGCGAGCCCGAACUAGUCUCAGCACUGGGGGACAUCGUACCUCC
............((((((.((((..((((((.((....)).))))))...))))))))))..(((((........))))) (-28.18 = -27.93 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:13:03 2006