Locus 40

Sequence ID Eco_1
Location 4,206,448 – 4,206,568
Length 120
Max. P 0.532626
window56

overview

Window 6

Location 4,206,448 – 4,206,568
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -44.27
Consensus MFE -40.17
Energy contribution -40.83
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.70
Structure conservation index 0.91
SVM decision value -0.00
SVM RNA-class probability 0.532626
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4206448 120 - 1
CACAGCACGGCUUAUUUUACGGGGGCCGCACGGUUGUUGCCCGACCUGUCCGGGGUCAUAGUCCGCUUACGCACGGACACGUGUGGAGCCCCUCCUUUGACUUUCAUGUCAACGCUUUUA
...(((..............((((.(((((((((((.....)))))(((((((((......)))((....)).)))))).))))))..))))....(((((......))))).))).... ( -44.20)
>Hin_1 278 120 - 1
CACAGCACAGCUUACUUCAGGGGGGCCCCACGGUUGUUGCCCGACCUGUCCGGGGUCAUAGUCCGCUUACGCACGGACACGUGUGGAGCCCCUCCUUUGACUUUCAUGUCAACCCUUUUG
..................((((((((.(((((((((.....)))))(((((((((......)))((....)).))))))...)))).))))).)))(((((......)))))........ ( -44.40)
>Ype_1 281 120 - 1
CACAGCACGGCUUAUUUUACGGGGGCCGCACGGUUGUUGCCCGACCUGUCCGGGGUCAUAGUCCGCUUACGCACGGACACGUGUGGAGCCCCUCCUUUGACUUUCAUGUCAACGCUUUUA
...(((..............((((.(((((((((((.....)))))(((((((((......)))((....)).)))))).))))))..))))....(((((......))))).))).... ( -44.20)
>consensus
CACAGCACGGCUUAUUUUACGGGGGCCGCACGGUUGUUGCCCGACCUGUCCGGGGUCAUAGUCCGCUUACGCACGGACACGUGUGGAGCCCCUCCUUUGACUUUCAUGUCAACGCUUUUA
...(((..............((((.(((((((((((.....)))))(((((((((......)))((....)).)))))).))))))..))))....(((((......))))).))).... (-40.17 = -40.83 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:12:51 2006