Locus 38

Sequence ID Eco_1
Location 4,173,495 – 4,173,580
Length 85
Max. P 0.600817
window54

overview

Window 4

Location 4,173,495 – 4,173,580
Length 85
Sequences 6
Columns 85
Reading direction reverse
Mean pairwise identity 91.51
Mean single sequence MFE -30.97
Consensus MFE -28.45
Energy contribution -28.15
Covariance contribution -0.30
Combinations/Pair 1.09
Mean z-score -1.11
Structure conservation index 0.92
SVM decision value 0.14
SVM RNA-class probability 0.600817
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4173495 85 - 1
CGUACUUCCCUACGGAAGCUAGUGAGAGGCGGUGGUUGAUGGCCGCGUGUCACACUACGGAGUUAAGCCUCGGCUUUUGGCCACC
.((..(((.((((....).))).)))..))((((((..(.((((.((((......))))(((......))))))).)..)))))) ( -31.70)
>Hin_1 1 82 - 1
CGUACUACCCCACGGAAGCUAGUGAGAGGCGGGGGUAGCUAACCGCGUGUCACACUACAGAGUUAAGCCUCGGCUUUUGGCC---
............((((((((((((.((.(((.((........)).))).)).))))...(((......)))))))))))...--- ( -27.30)
>Lpn_1 1 82 - 1
CGUACUACCCUACGGAAGCUAGUGAGAGGCGGGGGUAGCUGUCCGCGUGUCACACUAAGGAGUUAAACCUCGGCUUUUGGCC---
............((((((((.((((.(.(((((.(....).))))).).))))......(((......)))))))))))...--- ( -26.90)
>Sfl_1 1 85 - 1
CGUACUUCCCUACGGAAGCUAGUGAGAGGCGGUGAGUGAUGGCCGCGUGUCACACUACGGAGUUAAGCCUCGGCUUUUGGCCACC
(((((((((....)))))...((((.(.(((((.(....).))))).).))))..))))(((......)))(((.....)))... ( -33.30)
>Sty_1 1 85 - 1
CGUACUUCCCUACGGAAGCUAGUGAGAGGCGGUGAGUGAUGGCCGCGUGUCACACUACGGAGUUAAGCCUCGGCUUUUGGCCACC
(((((((((....)))))...((((.(.(((((.(....).))))).).))))..))))(((......)))(((.....)))... ( -33.30)
>Ype_1 1 85 - 1
CGUACUUCCCUACGGAAGCUAGUGAGAGGCGGUGAGUGAUGGCCGCGUGUCACACUACGGAGUUAAGCCUCGGCUUUUGGCCACC
(((((((((....)))))...((((.(.(((((.(....).))))).).))))..))))(((......)))(((.....)))... ( -33.30)
>consensus
CGUACUUCCCUACGGAAGCUAGUGAGAGGCGGUGAGUGAUGGCCGCGUGUCACACUACGGAGUUAAGCCUCGGCUUUUGGCCACC
............((((((((.((((.(.(((((.(....).))))).).))))......(((......)))))))))))...... (-28.45 = -28.15 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:12:44 2006