| Sequence ID | Eco_1 |
|---|---|
| Location | 4,164,576 – 4,164,696 |
| Length | 120 |
| Max. P | 0.773369 |
| Location | 4,164,576 – 4,164,696 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.22 |
| Mean single sequence MFE | -26.61 |
| Consensus MFE | -24.55 |
| Energy contribution | -24.67 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.773369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4164576 120 + 1 UAUAAGGAUAUUGAAAUCAAUAUUGUUGGACGCCUUAGCCUAAGAAUUAAACGGCUUUAGCGUCAAAUCCCUUAAAGAUACAAGAUUCCGUCAUUAGGACUUUAAUAAAGAGCGAUUAAG ..(((.(((((((....))))))).)))(((((...((((............))))...))))).((((.(((........(((..(((.......)))))).......))).))))... ( -25.46) >Sfl_1 41 120 + 1 UAUAAGGAUAUUGAAAUCAAUAUUGUUAGACGCCUUAGCCUAAGAAUUAAACGGCUUUAGCGUCAAAUCCCUUAAAGAUACAAGAUUCCGUCAUUAGGACUUUAAUAAAGAGCGAUUAAG ..(((.(((((((....))))))).)))(((((...((((............))))...))))).((((.(((........(((..(((.......)))))).......))).))))... ( -25.96) >Sty_1 41 120 + 1 UAUAAGGAUAUUGAAAUCAAUAUUCAUAGACGCCUUAGCCUAAGAAUUAAACGGCUUUAGCGUCAAAUCCCUUAAAGAUACAAGAUUCUGUCAUUGGGACUUUAAUAAAGAGCGAUUAAG .....((((((((....))))))))...(((((...((((............))))...)))))...((((....(((........)))......))))..................... ( -28.40) >consensus UAUAAGGAUAUUGAAAUCAAUAUUGUUAGACGCCUUAGCCUAAGAAUUAAACGGCUUUAGCGUCAAAUCCCUUAAAGAUACAAGAUUCCGUCAUUAGGACUUUAAUAAAGAGCGAUUAAG ..(((.(((((((....))))))).)))(((((...((((............))))...))))).((((.(((...((........)).(((.....))).........))).))))... (-24.55 = -24.67 + 0.11)
| Location | 4,164,576 – 4,164,696 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.22 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -24.74 |
| Energy contribution | -24.30 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.714635 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4164576 120 - 1 CUUAAUCGCUCUUUAUUAAAGUCCUAAUGACGGAAUCUUGUAUCUUUAAGGGAUUUGACGCUAAAGCCGUUUAAUUCUUAGGCUAAGGCGUCCAACAAUAUUGAUUUCAAUAUCCUUAUA .........(((((((((......)))))).)))............((((((....((((((..((((............))))..))))))......(((((....))))))))))).. ( -24.90) >Sfl_1 41 120 - 1 CUUAAUCGCUCUUUAUUAAAGUCCUAAUGACGGAAUCUUGUAUCUUUAAGGGAUUUGACGCUAAAGCCGUUUAAUUCUUAGGCUAAGGCGUCUAACAAUAUUGAUUUCAAUAUCCUUAUA .........(((((((((......)))))).)))............((((((....((((((..((((............))))..))))))......(((((....))))))))))).. ( -25.30) >Sty_1 41 120 - 1 CUUAAUCGCUCUUUAUUAAAGUCCCAAUGACAGAAUCUUGUAUCUUUAAGGGAUUUGACGCUAAAGCCGUUUAAUUCUUAGGCUAAGGCGUCUAUGAAUAUUGAUUUCAAUAUCCUUAUA ..................(((((((....((((....))))........)))))))((((((..((((............))))..))))))(((((((((((....))))))..))))) ( -26.60) >consensus CUUAAUCGCUCUUUAUUAAAGUCCUAAUGACGGAAUCUUGUAUCUUUAAGGGAUUUGACGCUAAAGCCGUUUAAUUCUUAGGCUAAGGCGUCUAACAAUAUUGAUUUCAAUAUCCUUAUA ..................(((((((..(((.(((........)))))).)))))))((((((..((((............))))..)))))).....((((((....))))))....... (-24.74 = -24.30 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:12:08 2006