Locus 31

Sequence ID	Eco_1
Location	4,036,527 – 4,036,647
Length	120
Max. P	0.785546

overview

Window 0

Location	4,036,527 – 4,036,647
Length	120
Sequences	4
Columns	120
Reading direction	forward
Mean pairwise identity	99.58
Mean single sequence MFE	-38.47
Consensus MFE	-37.58
Energy contribution	-37.82
Covariance contribution	0.25
Combinations/Pair	1.00
Mean z-score	-2.18
Structure conservation index	0.98
SVM decision value	0.57
SVM RNA-class probability	0.785546
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 4036527 120 + 1
CAACACCGUAGCUAAAUCUGUGCUAGUAAUACAGACAGAAAGGUAAAUACCUGCAUGGCAAGCCGAUACGUUAAUCGGUGCUAACGAGGCAGGUACUACCAAUAGCGGGGAGCGGCCUGG
.....((((.((((..(((((.((........)))))))..((((..(((((((.((((..((((((......)))))))))).....))))))).))))..)))).....))))..... ( -38.80)
>Sfl_1 999 120 + 1
CAACACCGUAGCUAAAUCUGUGCUAGUAAUACAGACAGAAAGGUAAAUACCUGCAUGGCAAGCCGAUACGUUAAUCGGUGCUAACGAGGCAGGUACUACCAAUAGCGGGGAGCGGCCUGG
.....((((.((((..(((((.((........)))))))..((((..(((((((.((((..((((((......)))))))))).....))))))).))))..)))).....))))..... ( -38.80)
>Sty_1 1001 120 + 1
CAACACCGUAGCUAAAUCUGUGCUAGUAAUACAGACAGAAAGGUAAAUACCUGCAUGGCAAGCCGAUACGUUAAUCGGUGCUAACGAGGCAGGUACUACCAAUAGCGGGGAGCGGCCUGG
.....((((.((((..(((((.((........)))))))..((((..(((((((.((((..((((((......)))))))))).....))))))).))))..)))).....))))..... ( -38.80)
>Ype_1 998 120 + 1
CAACACCGUAGCUAAAUCUGUGCUAGUAAUACAGACAGAAAGGUAAAUACCUGCAUGGAAAGCCGAUACGUUAAUCGGUGCUAACGAGGCAGGUACUACCAAUAGCGGGGAGCGGCCUGG
.....((((.((((..(((((.((........)))))))..((((..(((((((.(((...((((((......)))))).))).....))))))).))))..)))).....))))..... ( -37.50)
>consensus
CAACACCGUAGCUAAAUCUGUGCUAGUAAUACAGACAGAAAGGUAAAUACCUGCAUGGCAAGCCGAUACGUUAAUCGGUGCUAACGAGGCAGGUACUACCAAUAGCGGGGAGCGGCCUGG
.....((((.((((..(((((.((........)))))))..((((..(((((((.((((..((((((......)))))))))).....))))))).))))..)))).....))))..... (-37.58 = -37.82 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:12:02 2006