Locus 30

Sequence ID Eco_1
Location 4,033,488 – 4,033,608
Length 120
Max. P 0.842919
window39

overview

Window 9

Location 4,033,488 – 4,033,608
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -30.40
Consensus MFE -30.32
Energy contribution -30.10
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.81
Structure conservation index 1.00
SVM decision value 0.76
SVM RNA-class probability 0.842919
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4033488 120 + 1
CACAAAGGUGCGGCAGCUGGUCUCCAACAGGGGCCGGUAAUACAGCUGGAAAUAUUUCUAUAUCUCAGCAUAAACAUAGAAGCAUUUAAUGAUUAUUUGGUGUUAAUCUCGUUAACAUAC
.....((((((..(.(((((((((.....)))))))))......((((((.(((....))).)).)))).........)..))))))............((((((((...)))))))).. ( -30.50)
>Sfl_1 81 120 + 1
CACAAAGGUGCGGCAGCUGGUCUCCAACAGGGGCCGGUAAUACAGCUGAAAAUAUUUCUAUAUCUCAGCAUAAACAUAGAAGCAUUUAAUGAUUAUUUGGUGUUAAUCUCGUUAACAUAC
.....((((((..(.(((((((((.....)))))))))......(((((..((((....)))).))))).........)..))))))............((((((((...)))))))).. ( -30.50)
>Sty_1 81 120 + 1
CACAAAGGUGCGGCAGCUGGUCUCCAACAGGGGCCGGUAAUACAGCUGAAAAUAUAUCUAUAUCUCAGCAUAAACAUAGAAGCAUUUAAUGAUUAUUUGGUGUUAAUCUCGUUAACAUAC
.....((((((..(.(((((((((.....)))))))))......(((((..((((....)))).))))).........)..))))))............((((((((...)))))))).. ( -30.20)
>consensus
CACAAAGGUGCGGCAGCUGGUCUCCAACAGGGGCCGGUAAUACAGCUGAAAAUAUUUCUAUAUCUCAGCAUAAACAUAGAAGCAUUUAAUGAUUAUUUGGUGUUAAUCUCGUUAACAUAC
.....((((((..(.(((((((((.....)))))))))......(((((..((((....)))).))))).........)..))))))............((((((((...)))))))).. (-30.32 = -30.10 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:59 2006