Locus 3

Sequence ID Eco_1
Location 224,487 – 224,607
Length 120
Max. P 0.781832
window4

overview

Window 4

Location 224,487 – 224,607
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.11
Mean single sequence MFE -40.95
Consensus MFE -35.76
Energy contribution -35.43
Covariance contribution -0.32
Combinations/Pair 1.19
Mean z-score -2.12
Structure conservation index 0.87
SVM decision value 0.56
SVM RNA-class probability 0.781832
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 224487 120 - 1
UGAUCAACAGUGGGCGUCUUCUGUAUGACCCACAGCGUAACGCCCCCUGCCGCGCCGCUGUGGGUCGGUAGCCCCCUACUGACAUAACCGCUUCGCCGCAUUGGUGUAUACUACCCCUUU
.......(((((((((.......((((.(((((((((...(((........))).)))))))))(((((((....))))))))))).......)))).)))))................. ( -43.54)
>Hin_1 226 120 - 1
UGAUCUACAGCGAGCGUUUUCUGUACGACCCACAGCGUAACGCCCCCUGCCGCGCCGCUGUGGGUCGGUAGCCCCCCACUGACAUAACCUUGAAGCCACAUUGAUGUAUACUAUACCUUU
.....((((.((((.(((...(((.((((((((((((...(((........))).)))))))))))).(((.......)))))).)))))))............))))............ ( -32.72)
>Sty_1 226 120 - 1
UGAUCAACAGUGGGCGUCUUCUGUAUGACCCACAGCGUAACGCCCCCUGCCGCGCCGCUGUGGGUCGGUAGCCCCCUACUGACAUAACAGUUUCGCCGCAUUGGUGUAUACUACCCCUUU
.......(((((((((....(((((((.(((((((((...(((........))).)))))))))(((((((....)))))))))).))))...)))).)))))................. ( -46.60)
>consensus
UGAUCAACAGUGGGCGUCUUCUGUAUGACCCACAGCGUAACGCCCCCUGCCGCGCCGCUGUGGGUCGGUAGCCCCCUACUGACAUAACCGUUUCGCCGCAUUGGUGUAUACUACCCCUUU
.......(((((((.(.((......((((((((((((...(((........))).))))))))))))..)).).)))))))((((....((......))....))))............. (-35.76 = -35.43 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:09:38 2006