Locus 27

Sequence ID	Eco_1
Location	3,942,672 – 3,942,792
Length	120
Max. P	0.606190

overview

Window 5

Location	3,942,672 – 3,942,792
Length	120
Sequences	4
Columns	120
Reading direction	forward
Mean pairwise identity	99.58
Mean single sequence MFE	-44.42
Consensus MFE	-43.58
Energy contribution	-43.83
Covariance contribution	0.25
Combinations/Pair	1.00
Mean z-score	-1.86
Structure conservation index	0.98
SVM decision value	0.15
SVM RNA-class probability	0.606190
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 3942672 120 + 1
CCCUAGCCGGCCUAUCAAGGUAGGCAUCCAGUCGAGCAGAAGAAACAUUUGGGCCAAGGAUCUGCCGGAAGACGGCCAGUCAGAGUGGAGUUACGGCCCGAUGGGUACUAGGCAGAGGAA
.(((.(((.((((((....))))))(((((.((.....))........(((((((...(((..((((.....))))..)))...(((....)))))))))))))))....)))..))).. ( -45.00)
>Sfl_1 959 120 + 1
CCCUAGCCGGCCUAUCAAGGUAGGCAUCCAGUCGAGCAGAAGAAACAUUUGGGCCAAGGAUCUGCCGGAAGACGGCCAGUCAGAGUGGAGUUACGGCCCGAUGGGUACUAGGCAGAGGAA
.(((.(((.((((((....))))))(((((.((.....))........(((((((...(((..((((.....))))..)))...(((....)))))))))))))))....)))..))).. ( -45.00)
>Sty_1 961 120 + 1
CCCUAGCCGGCCUAUCAAGGUAGGCAUCCAGUCGAGCAGAAGAAACAUUUGGGCCAAGGAUCUGCCGGAAGACGGCCAGUCAGAGUGGAGUUACGGCCCGAUGGGUACUAGGCAGAGGAA
.(((.(((.((((((....))))))(((((.((.....))........(((((((...(((..((((.....))))..)))...(((....)))))))))))))))....)))..))).. ( -45.00)
>Ype_1 958 120 + 1
CCCUAGCCGGCCUAUCAAGGUAGGCAUCCAGUCGAGCAGAAGAAACAUUUGGGCCAAGGAUCUGCCGGAAGACGGCCAGUCAGAGUGGAGUUACGGCCAGAUGGGUACUAGGCAGAGGAA
.(((.(((.(((((((..(((.(((.((((.(((.((.(((......)))..)))...(((..((((.....))))..))).)).)))))))...))).)))))))....)))..))).. ( -42.70)
>consensus
CCCUAGCCGGCCUAUCAAGGUAGGCAUCCAGUCGAGCAGAAGAAACAUUUGGGCCAAGGAUCUGCCGGAAGACGGCCAGUCAGAGUGGAGUUACGGCCCGAUGGGUACUAGGCAGAGGAA
.(((.(((.((((((....))))))(((((.((.....))........(((((((...(((..((((.....))))..)))...(((....)))))))))))))))....)))..))).. (-43.58 = -43.83 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:47 2006