Locus 26

Sequence ID Eco_1
Location 3,940,125 – 3,940,245
Length 120
Max. P 0.776245
window34

overview

Window 4

Location 3,940,125 – 3,940,245
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -41.70
Consensus MFE -41.70
Energy contribution -41.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 1.00
SVM decision value 0.54
SVM RNA-class probability 0.776245
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 3940125 120 - 1
GUGGUCACGCAUCACAUGCCUACGCACGUGCGUAGGUACCCCUUUACUUUACCGAUCGCCUAGGCGGCUCUGCUCUUCGGCCAAUCCUGCGGUCUAUGUCACUCACGUUGUGUGAGCCGU
..(((((((((.(...(((((((((....)))))))))...............((((((..(((.((((.........))))...)))))))))............).))))))).)).. ( -41.70)
>Sfl_1 441 120 - 1
GUGGUCACGCAUCACAUGCCUACGCACGUGCGUAGGUACCCCUUUACUUUACCGAUCGCCUAGGCGGCUCUGCUCUUCGGCCAAUCCUGCGGUCUAUGUCACUCACGUUGUGUGAGCCGU
..(((((((((.(...(((((((((....)))))))))...............((((((..(((.((((.........))))...)))))))))............).))))))).)).. ( -41.70)
>Sty_1 441 120 - 1
GUGGUCACGCAUCACAUGCCUACGCACGUGCGUAGGUACCCCUUUACUUUACCGAUCGCCUAGGCGGCUCUGCUCUUCGGCCAAUCCUGCGGUCUAUGUCACUCACGUUGUGUGAGCCGU
..(((((((((.(...(((((((((....)))))))))...............((((((..(((.((((.........))))...)))))))))............).))))))).)).. ( -41.70)
>consensus
GUGGUCACGCAUCACAUGCCUACGCACGUGCGUAGGUACCCCUUUACUUUACCGAUCGCCUAGGCGGCUCUGCUCUUCGGCCAAUCCUGCGGUCUAUGUCACUCACGUUGUGUGAGCCGU
..(((((((((.(...(((((((((....)))))))))...............((((((..(((.((((.........))))...)))))))))............).))))))).)).. (-41.70 = -41.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:44 2006