Locus 21

Sequence ID Eco_1
Location 3,425,521 – 3,425,641
Length 120
Max. P 0.903405
window26

overview

Window 6

Location 3,425,521 – 3,425,641
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.67
Mean single sequence MFE -36.40
Consensus MFE -32.54
Energy contribution -32.82
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -1.45
Structure conservation index 0.89
SVM decision value 1.03
SVM RNA-class probability 0.903405
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 3425521 120 - 1
AAGCGCAUACUUAGUUAGGCGGAUAUUAUAAGAUCCAUAAGCCGAAAGCGGCGCAAAAUCGUCUGAGCGCGCCCGGGGCAGAGAUAGAUGGCCCGGUGGAAUCCAGAAGCAAAACAUCAC
..((((........((((((((((........))))....((((....))))........))))))))))(((((((.((........)).)))))(((...)))...)).......... ( -37.10)
>Hin_1 281 120 - 1
AAGCGCACACUUAGUUAGGCGGAUAUUAUAAGAUCCAUAAGCCGAAAGCGGCGCAAAAUCGUCUGAGCGCGCUGGGGGCAGAGAUAGAUGGCCCGGUGGGGUCCAGAAGUAAAACAUAAG
..((((.(.(((.....(((((((........))))....)))..))).))))).......(((((.(.((((((.(.((........)).))))))).).).))))............. ( -33.90)
>Sfl_1 281 120 - 1
AAGCGCAUACUUAGUUAGGCGGAUAUUAUAAGAUCCAUAAGCCGAAAGCGGCGCAAAAUCGUCUGAGCGCGCCCGGGGCAGAGAUAGAUGGCCCGGUGGAAUCCAGAAGCAAAACAUCAC
..((((........((((((((((........))))....((((....))))........))))))))))(((((((.((........)).)))))(((...)))...)).......... ( -37.10)
>Sty_1 281 120 - 1
AAGCGCAUACUUAGUUAGGCGGAUAUUAUAAGAUCCAUAAGCCGAAAGCGGCGCAAAAUCGUCUGAGCGCGCCCGGGGCAGAGAUAGAUGGCCCGGUGGAAUCCAGAAGCAAAACAUCAC
..((((........((((((((((........))))....((((....))))........))))))))))(((((((.((........)).)))))(((...)))...)).......... ( -37.10)
>Ype_1 281 120 - 1
AAGCGCAUACUUAGUUAGACGGACAUUACAAGAUCCAUAAGCCGAAAGCGGCGCAAAAUCGUCUGAGCGCGCUGGGGGCAGAGAUAGAUGGCCCGGUGGAUUCCAGGAGGAAAACAUAGC
..((((........((((((((((.......).)))....((((....))))........))))))))))(((.(((.((........)).))).(((..((((....))))..)))))) ( -36.80)
>consensus
AAGCGCAUACUUAGUUAGGCGGAUAUUAUAAGAUCCAUAAGCCGAAAGCGGCGCAAAAUCGUCUGAGCGCGCCCGGGGCAGAGAUAGAUGGCCCGGUGGAAUCCAGAAGCAAAACAUCAC
..((((........((((((((((........))))....((((....))))........))))))))))(((((((.((........)).)))))(((...)))...)).......... (-32.54 = -32.82 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:14 2006