Locus 20

Sequence ID	Eco_1
Location	3,424,122 – 3,424,242
Length	120
Max. P	0.963360

overview

Window 5

Location	3,424,122 – 3,424,242
Length	120
Sequences	3
Columns	120
Reading direction	reverse
Mean pairwise identity	86.94
Mean single sequence MFE	-40.90
Consensus MFE	-37.35
Energy contribution	-36.59
Covariance contribution	-0.77
Combinations/Pair	1.17
Mean z-score	-2.37
Structure conservation index	0.91
SVM decision value	1.55
SVM RNA-class probability	0.963360
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 3424122 120 - 1
GAUGUUGUUGCUAAAAACUUUCAGGGUAUGGAGGUCAAUAAAGGCCACUUUGCUCAGGCCUCUGUCGUAUUAACGCCCGGCUGGAAAUAAGCGACGGGGGAGAUCGAAAUGGUAGUAGCA
.....((((((((....(((((.(((((.((.((((......)))).)).)))))...((((((((((.(((...((.....))...))))))))))))).....)))).).)))))))) ( -39.40)
>Lpn_1 480 119 - 1
GAUGUUGUUGCUAAAAACUUUCUGGGCUUGGAGGCCAGUAAAGGCCUCGUUGUUCAGGCCUUUGCCGUAAUAACGCCGGGGAGGAAAAA-GCGGCGAGGGGAAUCGAAAUGGUAGAAGUA
..(.((((((((.....((((((.(((...((((((......))))))((((((..(((....)))..))))))))).))))))....)-))))))).)..................... ( -43.10)
>Sty_1 480 120 - 1
GAUGUUGUUGCUAAAAACUUUCAGGGUAUGGUGGUCAAUAAAGGCCUCUUUGCUCAGGCCUCUGUCGUAUUAACGCCCGGCCGGAAAUAAGCGACGGGGGAGAUCGAAAUGGUAGUAGCA
.....((((((((....(((((.(((((.((.((((......)))).)).)))))...((((((((((.(((...((.....))...))))))))))))).....)))).).)))))))) ( -40.20)
>consensus
GAUGUUGUUGCUAAAAACUUUCAGGGUAUGGAGGUCAAUAAAGGCCUCUUUGCUCAGGCCUCUGUCGUAUUAACGCCCGGCAGGAAAUAAGCGACGGGGGAGAUCGAAAUGGUAGUAGCA
.....((((((((....(((((.(((((.((.((((......)))).)).)))))...((((((((((.......((.....))......)))))))))).....)))).).)))))))) (-37.35 = -36.59 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:10 2006