| Sequence ID | Eco_1 |
|---|---|
| Location | 224,091 – 224,211 |
| Length | 120 |
| Max. P | 0.904694 |
| Location | 224,091 – 224,211 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.00 |
| Mean single sequence MFE | -48.33 |
| Consensus MFE | -43.39 |
| Energy contribution | -44.17 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.904694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 224091 120 + 1 AGACCCCUGGACCAUUAGGGGCUCGCGGCGAGGUGUCUACCCAAUUGGGGUAGACUUUAAGAUCCCGGGAGGGAUACCGAGACGUAUCACAGCGAAUACAAGCUGGGAAUUCCAUUGGUG .(((((((((....))))))).))(((.(..(((((((((((.....))))))))......(((((....))))))))..).)))((((((((........))))((....))..)))). ( -48.50) >Hin_1 320 120 + 1 AGACCCCUGGACCAUUAGGGGCUCGCGGCGAGGUGUCUACCCAAUUGGGGAAGACUUUAACAUGCCGGGGGGGAUACCGAGACGUAUGACAGCGAAUACAAGCUGGGAAUUCCUCUGGUG .(((((((((....))))))).)).(((((.(..((((.(((.....))).)))).....).)))))((((((((.((.((..((((........))))...)).)).)))))))).... ( -45.40) >Ype_1 323 120 + 1 AGACCCCUGGACCAUUAGGGGCUCGCGGCGAGGUGUCUACCCAAUUGGGGUAGACUUUGAGAUCCCGGGAGGGAUACCGAGACGUACCACAGCGAAUACAAGCUGGGAAUUCCAUUGGUG .(((((((((....))))))).))(((.(..(((((((((((.....))))))))......(((((....))))))))..).)))((((((((........))))((....))..)))). ( -51.10) >consensus AGACCCCUGGACCAUUAGGGGCUCGCGGCGAGGUGUCUACCCAAUUGGGGUAGACUUUAAGAUCCCGGGAGGGAUACCGAGACGUAUCACAGCGAAUACAAGCUGGGAAUUCCAUUGGUG .(((((((((....))))))).))(((.(..(((((((((((.....))))))))......(((((....))))))))..).)))((((((((........))))((....))..)))). (-43.39 = -44.17 + 0.78)
| Location | 224,091 – 224,211 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.00 |
| Mean single sequence MFE | -41.37 |
| Consensus MFE | -37.75 |
| Energy contribution | -38.53 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.836467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 224091 120 - 1 CACCAAUGGAAUUCCCAGCUUGUAUUCGCUGUGAUACGUCUCGGUAUCCCUCCCGGGAUCUUAAAGUCUACCCCAAUUGGGUAGACACCUCGCCGCGAGCCCCUAAUGGUCCAGGGGUCU .(((..((((....(((....(..(((((.((((...(((((((........)))))))......((((((((.....))))))))...)))).)))))..)....)))))))..))).. ( -44.80) >Hin_1 320 120 - 1 CACCAGAGGAAUUCCCAGCUUGUAUUCGCUGUCAUACGUCUCGGUAUCCCCCCCGGCAUGUUAAAGUCUUCCCCAAUUGGGUAGACACCUCGCCGCGAGCCCCUAAUGGUCCAGGGGUCU .....((((......((((........))))....((((.((((........)))).))))....((((.(((.....))).)))).)))).......((((((........)))))).. ( -34.70) >Ype_1 323 120 - 1 CACCAAUGGAAUUCCCAGCUUGUAUUCGCUGUGGUACGUCUCGGUAUCCCUCCCGGGAUCUCAAAGUCUACCCCAAUUGGGUAGACACCUCGCCGCGAGCCCCUAAUGGUCCAGGGGUCU .((((..((....))((((........))))))))...((.(((((((((....)))))......((((((((.....)))))))).....)))).))((((((........)))))).. ( -44.60) >consensus CACCAAUGGAAUUCCCAGCUUGUAUUCGCUGUGAUACGUCUCGGUAUCCCUCCCGGGAUCUUAAAGUCUACCCCAAUUGGGUAGACACCUCGCCGCGAGCCCCUAAUGGUCCAGGGGUCU .......((.....)).........((((.((((...(((((((........)))))))......((((((((.....))))))))...)))).))))((((((........)))))).. (-37.75 = -38.53 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:09:34 2006