Locus 19

Sequence ID	Eco_1
Location	3,421,403 – 3,421,516
Length	113
Max. P	0.615057

overview

Window 4

Location	3,421,403 – 3,421,516
Length	113
Sequences	4
Columns	120
Reading direction	forward
Mean pairwise identity	85.94
Mean single sequence MFE	-34.30
Consensus MFE	-25.01
Energy contribution	-24.82
Covariance contribution	-0.19
Combinations/Pair	1.05
Mean z-score	-1.56
Structure conservation index	0.73
SVM decision value	0.17
SVM RNA-class probability	0.615057
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 3421403 113 + 1
UCUUGGAAUGUAUCGUGUACGUUUACGGUC-CUU------CCAACCUACAUUCAUGGGCUCUUCGCCCAGCUGCCGCGCUGCACUGCAUCCGUACCGAUGUCUUCGAGACAUCUAGUAAC
(((((((...(((((.(((((..(.((((.-...------..............(((((.....)))))((.((...)).)))))).)..))))))))))..)))))))........... ( -32.00)
>Sfl_1 1 119 + 1
UCCUGCAAAAUGACGUAUAGGUCUACGGACCCCAACAGG-UCCGCCUACAUUCAUGGGCUCUUCGCCCAGCUGCCGCGCUGCACUGCAUCCGUACCGAUGUCUUCGAGACAUCUAGUAAC
...((((..((((.((.((((....((((((......))-)))))))).))))))((((.....)))).((.((...)).))..))))........((((((.....))))))....... ( -36.00)
>Sty_1 1 113 + 1
UCUUGGAAUGUUUCGUGUACGUCUGCGGCC-CCU------CCAACCUACAUUCAUGGGCUCUACGCCCAGCUGCCGCGCUGCACUGCAUCCGUACCGAUGUCUUCGAGACAUCUAGUAAC
..(((((.(((((((...(((((.(((((.-...------..............(((((.....)))))...)))))((......)).........)))))...)))))))))))).... ( -35.10)
>Ype_1 1 120 + 1
UCCUGCAAAAUGACGUAUAGGUCUACGGACCCCAACAGAAUCCGCCUACAUUUAUGGGCUCGUCGCCCAGCUGCCGCGCUGCACUGCAUCCGUACCGAUGUCUUCGAGACAUCUAGUAAC
...((((....((((....((((....))))............(((((......))))).))))...((((......))))...))))........((((((.....))))))....... ( -34.10)
>consensus
UCCUGCAAAAUGACGUAUACGUCUACGGAC_CCA______CCAACCUACAUUCAUGGGCUCUUCGCCCAGCUGCCGCGCUGCACUGCAUCCGUACCGAUGUCUUCGAGACAUCUAGUAAC
.......................(((((..........................(((((.....)))))(((((......)))..))..)))))..((((((.....))))))....... (-25.01 = -24.82 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:06 2006