Locus 17

Sequence ID Eco_1
Location 3,053,964 – 3,054,084
Length 120
Max. P 0.680064
window21

overview

Window 1

Location 3,053,964 – 3,054,084
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.00
Mean single sequence MFE -39.23
Consensus MFE -36.93
Energy contribution -36.50
Covariance contribution -0.43
Combinations/Pair 1.13
Mean z-score -1.71
Structure conservation index 0.94
SVM decision value 0.30
SVM RNA-class probability 0.680064
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 3053964 120 + 1
UUUUCAAUCGAUGGUGGUUGCGCCAAACGAGUUCUCGCGCUCCUAGAUCUCGAUCUGGGAUGUGAACCACCCCAGUAGCUGCUGCCAGUGAAUUGGGUACAAACAUACGUUUGAGCGAUA
....((((((....))))))(((((((((.....(((((.((((((((....))))))))))))).....((((((.((((....))))..))))))..........)))))).)))... ( -41.20)
>Sfl_1 1 120 + 1
UUUUCAAUCGAUGGUGGUUGCGCCAAACGAGUUCUCGCGCUCCUAGAUCUCGAUCUGGGAUGUGAACCACCCCAGUAGCUGCUGCCAGUGAAUUGGGUACAAACAUACGUUUGAGCGAUA
....((((((....))))))(((((((((.....(((((.((((((((....))))))))))))).....((((((.((((....))))..))))))..........)))))).)))... ( -41.20)
>Sty_1 1 120 + 1
UUUUCAAUCAAUGGUGAUUGCGUCAAGCAGGUUCUUGCGUUCCUAGAUCUCGAUCUGCGAUGUGAACCACCCCAGUAGCUGCUGCCAGUGAAUUGGGUACAAACAUACGUUUGAGCGAUA
................(((((.((((((.(((((..(((((.(.((((....))))).))))))))))..((((((.((((....))))..))))))...........))))))))))). ( -35.30)
>consensus
UUUUCAAUCGAUGGUGGUUGCGCCAAACGAGUUCUCGCGCUCCUAGAUCUCGAUCUGGGAUGUGAACCACCCCAGUAGCUGCUGCCAGUGAAUUGGGUACAAACAUACGUUUGAGCGAUA
....((((((....))))))(((((((((.....(((((.((((((((....))))))))))))).....((((((.((((....))))..))))))..........)))))).)))... (-36.93 = -36.50 +  -0.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:10:56 2006