Locus 16

Sequence ID Eco_1
Location 2,945,627 – 2,945,708
Length 81
Max. P 0.690637
window20

overview

Window 0

Location 2,945,627 – 2,945,708
Length 81
Sequences 6
Columns 82
Reading direction reverse
Mean pairwise identity 95.33
Mean single sequence MFE -32.17
Consensus MFE -29.99
Energy contribution -30.10
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.00
Structure conservation index 0.93
SVM decision value 0.33
SVM RNA-class probability 0.690637
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 2945627 81 - 1
-AUGCGAGCACUGUCCGGGGGACAGCUGCUGGUUAGUUUAUCCGUCCGCCAGGCCAGGCGUCGUACCUCAACGGCGCCAGCU
-..(((((((((((((...)))))).))))((.........))...)))..(((..((((((((......)))))))).))) ( -32.50)
>Hin_1 1 81 - 1
-AUGCGAACACUGUCCAGGGGACAGCUGUUGGUUAGUUUAUCCGUCCGCCAGGCCAGGCGUCGUACCUCAACGGCGCCAGCU
-..(((((((((((((...)))))).))))((.........))...)))..(((..((((((((......)))))))).))) ( -30.10)
>Lpn_1 1 81 - 1
-AUGCGAGCACUGUCCUGGGGACAGCUGAUGGUUAGUUUAUCCGUCCGCCAGGCCAGGCGUCGAACCUCAACGGCGCCAGCU
-.....(((..((.(((((((((....(((((.....))))).)))).))))).))(((((((........))))))).))) ( -33.10)
>Sfl_1 1 77 - 1
---GCGAGCACUGUCCGGGGGACAGCUGCUGGUUAGUUUAUCCGUCCGCCAGGCCAGGCGUCGUACCUCAACGGCGCCAG--
---((.((((((((((...)))))).)))).))..........(.((....)).).((((((((......))))))))..-- ( -31.70)
>Sty_1 1 82 - 1
AGUGCGAGCACUGUCCGGGGGACAGCUGCUGGUUAGUUUAUCCGUCCGCCAGGCCAGGCGUCGUACCUCAACGGCGCCAGCU
.(.(((((((((((((...)))))).))))((.........))...)))).(((..((((((((......)))))))).))) ( -33.10)
>Ype_1 1 81 - 1
-AUGCGAGCACUGUCCGGGGGACAGCUGCUGGUUAGUUUAUCCGUCCGCCAGGCCAGGCGUCGUACCUCAACGGCGCCAGCU
-..(((((((((((((...)))))).))))((.........))...)))..(((..((((((((......)))))))).))) ( -32.50)
>consensus
_AUGCGAGCACUGUCCGGGGGACAGCUGCUGGUUAGUUUAUCCGUCCGCCAGGCCAGGCGUCGUACCUCAACGGCGCCAGCU
...((.((((((((((...)))))).)))).))..........(.((....)).).((((((((......)))))))).... (-29.99 = -30.10 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:10:52 2006