Locus 14

Sequence ID Eco_1
Location 2,816,494 – 2,816,609
Length 115
Max. P 0.904558
window18

overview

Window 8

Location 2,816,494 – 2,816,609
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.19
Mean single sequence MFE -45.05
Consensus MFE -37.54
Energy contribution -37.85
Covariance contribution 0.31
Combinations/Pair 1.15
Mean z-score -2.26
Structure conservation index 0.83
SVM decision value 1.04
SVM RNA-class probability 0.904558
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 2816494 115 - 1
GUGCACGGCCUCUUGCCGUGCCCCUUACCGGUGACG-----CACGCCGGCGGGAUUACUACGUCGUGCCCCUCACAGGGGGGAUUUUAGUACCAUAAGCUAAUCCAGACGUAUACCACCG
..(((((((.....)))))))(((...((((((...-----..)))))).))).....((((((...((((.....))))((((..((((.......)))))))).))))))........ ( -47.20)
>Sfl_1 1 115 - 1
GUGCACGGCCUCUUGCCGUGCCCCUUACCGGUGACG-----CACGCCGGCGGGAUUACUACGUCGUGCCCCUCACAGGGGGGAUUUUAGUACCAUAAGCUAAUCCAGACGUAUACCACCG
..(((((((.....)))))))(((...((((((...-----..)))))).))).....((((((...((((.....))))((((..((((.......)))))))).))))))........ ( -47.20)
>Sty_1 1 115 - 1
GUGCACGGCCUCUUGCCGUGCCCCUUACCGGUGACG-----CACGCCGGCGGGAUUACUACGUCGUGCCCCUCACAGGGGGGAUUUUAGUACCAUAAGCUAAUCCAGACGUAUACCACCG
..(((((((.....)))))))(((...((((((...-----..)))))).))).....((((((...((((.....))))((((..((((.......)))))))).))))))........ ( -47.20)
>Ype_1 1 120 - 1
GUACACAACCUCUUGCCGUGCUUCUUACCGGUGACGAUAUCCACGGCGCCGGGAUUACUACGUCGUGCCCCUCACAGGGGGGAUUUUAGUACCACAAGCUAAUCUAGAUGUGUACCACCG
(((((((.(((..(((((((.....((.((....)).))..)))))))..)))..(((((....((.(((((....))))).))..))))).................)))))))..... ( -38.60)
>consensus
GUGCACGGCCUCUUGCCGUGCCCCUUACCGGUGACG_____CACGCCGGCGGGAUUACUACGUCGUGCCCCUCACAGGGGGGAUUUUAGUACCAUAAGCUAAUCCAGACGUAUACCACCG
..(((((((.....)))))))(((...((((((..........)))))).))).....((((((...((((.....))))((((..((((.......)))))))).))))))........ (-37.54 = -37.85 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:10:45 2006