| Sequence ID | Eco_1 |
|---|---|
| Location | 2,815,802 – 2,815,920 |
| Length | 118 |
| Max. P | 0.576750 |
| Location | 2,815,802 – 2,815,920 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.84 |
| Mean single sequence MFE | -38.70 |
| Consensus MFE | -35.29 |
| Energy contribution | -34.63 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.576750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 2815802 118 - 1 AUCCUGC--CUAGGUUCGCCUCACCUAGUUAUUCCUACCAGGGAGUAUACGUCCCUAAGCAGCACGCGUUCGCUGUCGCACUUAUGGAAGAAAGUGACAAGGGGCGAGGACAGUAUAAUU .((((..--((((((.......)))))).(((((((....)))))))..(((((((..(((((........))))).((((((........))))).).))))))))))).......... ( -38.40) >Sfl_1 1 119 - 1 AUCCUGCAACUGGGUACGCCUCUCUUAGU-AUUCCUACCAAGGAGUAUACGUCCCUAAGCAGCACGCGUUCGCUGUCGCACUUAUGGAAGAAAGUGACAAGGGGCGAGGACAGUAUAAUU ..((.......))((((.((((.....((-((((((....))))))))..((((((..(((((........))))).((((((........))))).).))))))))))...)))).... ( -38.70) >Sty_1 1 114 - 1 AUCCUGC--CUGGGUACGCCUCUCCUAGU-AUUCCUACCAAGGAGUAUACGUCCCUAAGCAGCACGCGUUCGCUGUCGCACUUAUGGAAGAAAGUGACAAGGGGCGAGGACAGUAUA--- ..((...--..))((((.((((.....((-((((((....))))))))..((((((..(((((........))))).((((((........))))).).))))))))))...)))).--- ( -39.00) >consensus AUCCUGC__CUGGGUACGCCUCUCCUAGU_AUUCCUACCAAGGAGUAUACGUCCCUAAGCAGCACGCGUUCGCUGUCGCACUUAUGGAAGAAAGUGACAAGGGGCGAGGACAGUAUAAUU .((((....(((((.........)))))..((((((....))))))...(((((((..(((((........))))).((((((........))))).).))))))))))).......... (-35.29 = -34.63 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:10:41 2006