Locus 123

Sequence ID	Eco_1
Location	4,604,312 – 4,604,472
Length	160
Max. P	0.864560

overview

Window 7

Location	4,604,312 – 4,604,432
Length	120
Sequences	3
Columns	120
Reading direction	forward
Mean pairwise identity	98.89
Mean single sequence MFE	-42.68
Consensus MFE	-40.13
Energy contribution	-42.47
Covariance contribution	2.33
Combinations/Pair	1.00
Mean z-score	-2.01
Structure conservation index	0.94
SVM decision value	0.63
SVM RNA-class probability	0.806198
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 4604312 120 + 1
AGUGCGAGCAAUAUCAACGUGGUUUUUGGUGCGAGGGGGGGGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAU
.(((((((...........(((((((.((((..((.(((((........)))))..((((....)))).))..)))).)))))))(.(((...........))))...)))))))..... ( -44.00)
>Sfl_1 241 120 + 1
AGUGCGAGCAAUAUCAACGUGAUUUUUGGUGCGAGGGGGGGGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAU
.(((((((....(((.....)))....((((((((((((((........)))))..((((....)))).......)))((.((....)).)).........)).)))))))))))..... ( -40.50)
>Sty_1 192 119 + 1
AGUGCGAGCAAUAUCAACGUGGUUUU-GGUGCGAGGGGGGGGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAU
.(((((((..........((((..((-((((..((((((((........)))))..((((....)))).......)))((.((....)).))))))))..))))....)))))))..... ( -43.54)
>consensus
AGUGCGAGCAAUAUCAACGUGGUUUUUGGUGCGAGGGGGGGGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAU
.(((((((...........(((((((.((((..((.(((((........)))))..((((....)))).))..)))).)))))))(.(((...........))))...)))))))..... (-40.13 = -42.47 +   2.33)

alignment

secondary structure

dotplot

Window 8

Location	4,604,352 – 4,604,472
Length	120
Sequences	3
Columns	120
Reading direction	forward
Mean pairwise identity	97.78
Mean single sequence MFE	-29.59
Consensus MFE	-27.45
Energy contribution	-29.34
Covariance contribution	1.89
Combinations/Pair	1.03
Mean z-score	-2.22
Structure conservation index	0.93
SVM decision value	0.84
SVM RNA-class probability	0.864560
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 4604352 120 + 1
GGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAUCAAUUCUUAAAAAGAAUUGCUACCACGGAGGCGCAUUCUA
(((.(((.........((((....))))..........((.((....)).))...))).)))((..((((((........(((((((.....)))))))......)))))).))...... ( -29.84)
>Sfl_1 281 120 + 1
GGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAUCAAUUCUUAAAAAGAAUUGCUACCACGGAGGCGCAUUCUA
(((.(((.........((((....))))..........((.((....)).))...))).)))((..((((((........(((((((.....)))))))......)))))).))...... ( -29.84)
>Sty_1 231 120 + 1
GGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAUCGAUUCUUGAAAAGAAUCACUACCACGGAGGCGCAUUCUA
(((.(((.........((((....))))..........((.((....)).))...))).)))((..((((((.........((((((.....)))))).......)))))).))...... ( -29.09)
>consensus
GGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAUCAAUUCUUAAAAAGAAUUGCUACCACGGAGGCGCAUUCUA
(((.(((.........((((....))))..........((.((....)).))...))).)))((..((((((........(((((((.....)))))))......)))))).))...... (-27.45 = -29.34 +   1.89)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:08:23 2006