Locus 122

Sequence ID Eco_1
Location 4,494,393 – 4,494,513
Length 120
Max. P 0.694070
window436

overview

Window 6

Location 4,494,393 – 4,494,513
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -36.60
Consensus MFE -34.60
Energy contribution -36.60
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 0.95
SVM decision value 0.34
SVM RNA-class probability 0.694070
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4494393 120 + 1
UAUAAUCCACAACGUUUUCCGCAUACCUCUUCAGUGCCGAAGUGGCGAAAUCGGUAGACGCAGUUGAUUCAAAAUCAACCGUAGAAAUACGUGCCGGUUCGAGUCCGGCCUUCGGCACCA
.................................((((((((((((((((.((((((......((((((.....))))))((((....))))))))))))))...)))..))))))))).. ( -36.60)
>Sfl_1 25 120 + 1
UAUAAUCCACAACGUUUUCCGCAUACCUCUUCAGUGCCGAAGUGGCGAAAUCGGUAGACGCAGUUGAUUCAAAAUCAACCGUAGAAAUACGUGCCGGUUCGAGUCCGGCCUUCGGCACCA
.................................((((((((((((((((.((((((......((((((.....))))))((((....))))))))))))))...)))..))))))))).. ( -36.60)
>Sty_1 25 120 + 1
UAUAAUCCACAACGUUUUCCGCAUACCUCUUCAGUGCCGAAGUGGCGAAAUCGGUAGACGCAGUUGAUUCAAAAUCAACCGUAGAAAUACGUGCCGGUUCGAGUCCGGCCUUCGGCACCA
.................................((((((((((((((((.((((((......((((((.....))))))((((....))))))))))))))...)))..))))))))).. ( -36.60)
>consensus
UAUAAUCCACAACGUUUUCCGCAUACCUCUUCAGUGCCGAAGUGGCGAAAUCGGUAGACGCAGUUGAUUCAAAAUCAACCGUAGAAAUACGUGCCGGUUCGAGUCCGGCCUUCGGCACCA
.................................((((((((((((((((.((((((......((((((.....))))))((((....))))))))))))))...)))..))))))))).. (-34.60 = -36.60 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:08:21 2006