Locus 12

Sequence ID Eco_1
Location 2,728,740 – 2,728,860
Length 120
Max. P 0.825526
window16

overview

Window 6

Location 2,728,740 – 2,728,860
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -40.40
Consensus MFE -37.65
Energy contribution -38.10
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.04
Structure conservation index 0.93
SVM decision value 0.70
SVM RNA-class probability 0.825526
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 2728740 120 + 1
GUUCCGCUAGACGUCAGGGUAUAACGGCCAGUGACUUGCAUUCCGCUUACACCCUGCCCUCGAUGACCGUACUGGUCAUUACUCGUCAGCGGCUACGGCCAUGUCCACAGCUGUUCAAAU
...(((((.((((.((((((.((((((..((((.....))))))).))).)))))).....(((((((.....)))))))...)))))))))..(((((..((....)))))))...... ( -40.10)
>Hin_1 1 120 + 1
GUUCCCCUAGACGUCAGGGUAUAACGGCCAGUGUCUUGCAUUCCGCUUACGCCCUGGCCACCAUGACCGCACUGGUCAUUACUCGUCAGCGGCUACGGCCAUGUCCACAGCUGUUCAAAU
.........((((((((((..((((((..((((.....))))))).)))..)))))))....((((((.....)))))).....)))((((((....))).((....)))))........ ( -41.00)
>Sty_1 1 120 + 1
GUUCCGCUAGACGUCAGGGUAUAACGGCCAGUGACUUGCAUUCCGCUUACACCCUGCCCUCGAUGACCGUACUGGUCAUUACUCGUCAGCGGCUACGGCCAUGUCCACAGCUGUUCAAAU
...(((((.((((.((((((.((((((..((((.....))))))).))).)))))).....(((((((.....)))))))...)))))))))..(((((..((....)))))))...... ( -40.10)
>consensus
GUUCCGCUAGACGUCAGGGUAUAACGGCCAGUGACUUGCAUUCCGCUUACACCCUGCCCUCGAUGACCGUACUGGUCAUUACUCGUCAGCGGCUACGGCCAUGUCCACAGCUGUUCAAAU
...(((((.((((.((((((.((((((..((((.....))))))).))).)))))).....(((((((.....)))))))...)))))))))..(((((..((....)))))))...... (-37.65 = -38.10 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:10:36 2006