Locus 117

Sequence ID Eco_1
Location 4,255,029 – 4,255,138
Length 109
Max. P 0.613569
window427

overview

Window 7

Location 4,255,029 – 4,255,138
Length 109
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 83.79
Mean single sequence MFE -26.55
Consensus MFE -18.80
Energy contribution -19.70
Covariance contribution 0.90
Combinations/Pair 1.16
Mean z-score -1.87
Structure conservation index 0.71
SVM decision value 0.16
SVM RNA-class probability 0.613569
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4255029 109 + 1
CCCUUCCAGAAUUCGAUAAAUCUCUGGUUUAUUGUGCAGUUUAUGGUUCCAAAAUCGCCUUUUGCUGUAUAUACUCACAGCAUAACUGUAUAUACACCCAGGGGGCGGA
.....((((((((((((((((.....))))))))...))))).)))........((((((((((.(((((((((.............)))))))))..)))))))))). ( -29.32)
>Sfl_1 1 109 + 1
CCCUUCCAGAUUUCGAUAAAUCUCUGGUUUAUUGUGCAGUUUAUGGUUCCAAAAUCGCCUUUUGCUGUAUAUACUCACAGUAUAACUGUAUAUACACCCAGGGGGCGGA
....(((.(((((((((((((.....)))))))).........((....)))))))((((((((.(((((((((.............)))))))))..))))))))))) ( -29.42)
>Sty_1 1 94 + 1
---------------AUAAAUCUCUUGUUUUUUGCGCCGUUUGUGGUUCCAAAAUCACCUUUAACUGUAUAUACUCACAGCAUGAUUGUAUAUACACCCAGGGGGCGGA
---------------...................((((....((((((....))))))((((...((((((((((((.....)))..)))))))))...)))))))).. ( -20.90)
>consensus
CCCUUCCAGA_UUCGAUAAAUCUCUGGUUUAUUGUGCAGUUUAUGGUUCCAAAAUCGCCUUUUGCUGUAUAUACUCACAGCAUAACUGUAUAUACACCCAGGGGGCGGA
....................(((((((.....(((((((((...(((.........)))...((((((........)))))).))))))))).....)))))))..... (-18.80 = -19.70 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:08:13 2006