Locus 114

Sequence ID Eco_1
Location 4,209,855 – 4,209,973
Length 118
Max. P 0.941084
window424

overview

Window 4

Location 4,209,855 – 4,209,973
Length 118
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.18
Mean single sequence MFE -48.50
Consensus MFE -42.15
Energy contribution -39.93
Covariance contribution -2.21
Combinations/Pair 1.16
Mean z-score -2.91
Structure conservation index 0.87
SVM decision value 1.31
SVM RNA-class probability 0.941084
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4209855 118 + 1
CAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGC-GCAAG-CGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGG
..((((((((....(((....)))......)))))))).....(((((...((((((..((((..(((((((((((.((-....)-)..))))))..)))))))))))))))...))))) ( -48.40)
>Hin_1 41 118 + 1
CAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGAUGCCUGCCCGGUGCUGGAAGGUUAAUUGAUGGUGUCAUC-GCAAG-AGAAGCACCUGAUCGAAGCCCCAGUAAACGGCGG
..((((((((....(((....)))......)))))))).....(((((...((((((..((((..((((((((((..((-....)-)...)))))..)))))))))))))))...))))) ( -46.90)
>Ype_1 41 120 + 1
CAGCACUGUGCAAACACGAAAGUGGACGUAUACAGUGUGACGCCUGCCCGGUGCUGGAAGGUUAAUUGAUGGGGUCAGCCGCAAGGCGAAGCUCUUGAUCGAAGCCCCAGUAAACGGCGG
..((((((((....(((....)))......)))))))).....(((((...((((((..((((..((((((((((..(((....)))...)))))..)))))))))))))))...))))) ( -50.20)
>consensus
CAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUGCCCGGUGCUGGAAGGUUAAUUGAUGGGGUCAGC_GCAAG_CGAAGCUCUUGAUCGAAGCCCCAGUAAACGGCGG
..((((((((....(((....)))......)))))))).....(((((...((((((..((((..((((((((((..(........)...)))))..)))))))))))))))...))))) (-42.15 = -39.93 +  -2.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:08:10 2006