Locus 10

Sequence ID	Eco_1
Location	2,724,774 – 2,724,894
Length	120
Max. P	0.993720

overview

Window 3

Location	2,724,774 – 2,724,894
Length	120
Sequences	4
Columns	120
Reading direction	reverse
Mean pairwise identity	92.22
Mean single sequence MFE	-42.33
Consensus MFE	-40.74
Energy contribution	-39.92
Covariance contribution	-0.81
Combinations/Pair	1.14
Mean z-score	-2.43
Structure conservation index	0.96
SVM decision value	2.42
SVM RNA-class probability	0.993720
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 2724774 120 - 1
GAAAGACUGGUCCCACGGUACUAGUCAAUGAAACGUGGGAGCGGAGUGGCGCUCUCACUGUUAGAACGGGAGGGGGUAAGACUCGAACGGGGCCGUGUAGACGGCUCAUAAGUAUCGGUA
......(((.(((((((...(........)...))))))).)))....((.(((((.((((....))))))))).))...((.(((((.(((((((....)))))))....)).))))). ( -45.40)
>Hin_1 361 120 - 1
UGAAGACUGGUCCCAGGGUACUAGUAAAUGAAACGUGGGAAUAGAGAACUGCUCUCACUUUUAGAAAGGGAGAGGGUAAGACUCGAACGGGGCCGUGUAGACGGCUCAUAAGUAUCGGUA
.....((((((((((.(...(........)...).)))))...(((...(((((((.((((.....)))).)))))))...))).....(((((((....))))))).......))))). ( -35.80)
>Sty_1 361 120 - 1
GAAAGACUGGUCCCACGGUACUAGUCAAUGAAACGUGGGAGCGGAGUGGCGCUCUCACUGUUAGAACGGGAGGGGGUAAGACUCGAACGGGGCCGUGUAGACGGCUCAUAAGUAUCGGUA
......(((.(((((((...(........)...))))))).)))....((.(((((.((((....))))))))).))...((.(((((.(((((((....)))))))....)).))))). ( -45.40)
>Ype_1 361 120 - 1
UGAAGACUGGUCCCACGGAACUAGUUAAUGAUACGUGGGAACGGAGUGGUGCUCUCACUUUUAGAAAGGGAGGGGGUAAGACUCGAACGGGGCCGUGUAGACGGCUCAUAAGUAUCGGUA
.....((((((((((((...(........)...)))))))((.((((..(((((((.((((.....)))).)))))))..)))).....(((((((....)))))))....)).))))). ( -42.70)
>consensus
GAAAGACUGGUCCCACGGUACUAGUCAAUGAAACGUGGGAACGGAGUGGCGCUCUCACUGUUAGAAAGGGAGGGGGUAAGACUCGAACGGGGCCGUGUAGACGGCUCAUAAGUAUCGGUA
......(((.(((((((...(........)...))))))).)))....((.(((((.((((....))))))))).))...((.(((((.(((((((....)))))))....)).))))). (-40.74 = -39.92 +  -0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:10:23 2006