Locus 1

Sequence ID Eco_1
Location 223,889 – 224,009
Length 120
Max. P 0.747833
window1

overview

Window 1

Location 223,889 – 224,009
Length 120
pre Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -42.04
Consensus MFE -41.81
Energy contribution -41.81
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.65
Structure conservation index 0.99
SVM decision value 0.47
SVM RNA-class probability 0.747833
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 223889 120 + 1
GUCCAGGAACGGGUCUCUGAAUGGCCUCCUACCCUUAGGAAACGUCGUGCUACGGCGGGAGGAGCCAAAGCGUCGCCACCGUUGUGGAUGACUUAAAACAAAGGAAAAUAAGUGGAGGCU
...(((..(....)..)))...(((((((.((((((.(....)(((((.(((((((((..((.((....))....)).))))))))))))))........)))).......))))))))) ( -41.81)
>Sfl_1 480 120 + 1
GUCCAGGAACGGGUCUCUGAAUGGCCUCCUACCCUUAGGAAACGUCGUGCUACGGCGGGAGGAGCCAAAGCGUCGCCACCGUUGUGGAUGACUUAAAACAAAGGAAAAUAAGUGGAGGCU
...(((..(....)..)))...(((((((.((((((.(....)(((((.(((((((((..((.((....))....)).))))))))))))))........)))).......))))))))) ( -41.81)
>Sty_1 477 120 + 1
GUCCAGGAACGGGUCUCUGAAUGGCCUCCUACCCUUAGGAAACGUCGUACUACGGCGGGAGGAGCCAAAGCGUCGCCACCGUUGUGGAUGACUUAAAACAAAGGAAAGUAAGUGGAGGCU
...(((..(....)..)))...((((((((((((((.(....)(((((.(((((((((..((.((....))....)).))))))))))))))........))))...)))...))))))) ( -42.50)
>consensus
GUCCAGGAACGGGUCUCUGAAUGGCCUCCUACCCUUAGGAAACGUCGUGCUACGGCGGGAGGAGCCAAAGCGUCGCCACCGUUGUGGAUGACUUAAAACAAAGGAAAAUAAGUGGAGGCU
...(((..(....)..)))...(((((((.((((((.(....)(((((.(((((((((..((.((....))....)).))))))))))))))........)))).......))))))))) (-41.81 = -41.81 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:09:29 2006