Locus 996

Sequence ID X_DroMel_CAF1
Location 2,893,140 – 2,893,249
Length 109
Max. P 0.715077
window1610

overview

Window 0

Location 2,893,140 – 2,893,249
Length 109
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 88.13
Mean single sequence MFE -25.87
Consensus MFE -22.27
Energy contribution -22.13
Covariance contribution -0.14
Combinations/Pair 1.03
Mean z-score -1.71
Structure conservation index 0.86
SVM decision value 0.39
SVM RNA-class probability 0.715077
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2893140 109 + 22224390
UUUUCGAAUUCCCUUCCCAAGUGCUUGAACCAUAAUGUUGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACGCGCAAAUGAAACAUAUGUAAC
..............................((((.(((((....).((((((((((((((((((((.......))))))))...))).))))))))))))))))).... ( -22.70)
>DroPse_CAF1 385622 108 + 1
CUCUGGAAUUCUCCUCCGU-CUGGCUCGGCCAUAAUGUCGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACGCGCAAAUGAAACAUAUGUAAC
....(((....)))..(((-.((((.((((......))))))...(((((((((((((((((((((.......))))))))...))).)))))))))).)).))).... ( -28.70)
>DroSec_CAF1 279911 109 + 1
UUGUCGAAUUCCCUUCCCAAGUGCUUGAACCAUAAUGUUGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACGCGCAAAUGAAACAUAUGUAAC
(((((((..........(((....)))..........))))))).(((((((((((((((((((((.......))))))))...))).))))))))))........... ( -24.65)
>DroEre_CAF1 303524 109 + 1
UUUUGAAAUUCCCCUCCCAAAUGUUUCAACCAUAAUGUGGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACGCGCAAAUGAAACAUAUGUAAC
.................((.(((((((..((((...))))........((((((((((((((((((.......))))))))...))).)))))))))))))).)).... ( -26.40)
>DroAna_CAF1 442057 101 + 1
CUU------UC--UCCUCCACUGUUUCGACCAUAAUGUUGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACGCAAACAGACGCGCAAAUGAAACAUAUGUAAC
...------..--........(((((((.(((......))))......((((((((((((((((((.......))))))))...))).)))))))))))))........ ( -24.10)
>DroPer_CAF1 404871 108 + 1
CUCUGGAAUUCUCCUCCGU-CUGGCUCGGCCAUAAUGUCGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACGCGCAAAUGAAACAUAUGUAAC
....(((....)))..(((-.((((.((((......))))))...(((((((((((((((((((((.......))))))))...))).)))))))))).)).))).... ( -28.70)
>consensus
CUUUGGAAUUCCCCUCCCAACUGCUUCAACCAUAAUGUUGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACGCGCAAAUGAAACAUAUGUAAC
..............................((((.(((.(....)(((((((((((((((((((((.......))))))))...))).))))))))))))))))).... (-22.27 = -22.13 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:55 2006