Locus 994

Sequence ID X_DroMel_CAF1
Location 2,885,029 – 2,885,125
Length 96
Max. P 0.928099
window1607

overview

Window 7

Location 2,885,029 – 2,885,125
Length 96
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 60.62
Mean single sequence MFE -20.93
Consensus MFE -6.90
Energy contribution -8.90
Covariance contribution 2.00
Combinations/Pair 1.33
Mean z-score -2.35
Structure conservation index 0.33
SVM decision value 1.19
SVM RNA-class probability 0.928099
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2885029 96 - 22224390
AAAAAGGUUUUCCUUUUACUUUUCGACAGGUAAUGAAAGUCCUUUCAACUUGUCAGAAAAUUUAAACUUAGAGAGUUUCAGUGUCUUU--------AAAUACGC
.((((((....))))))..((((((((((((..(((((....)))))))))))).))))).......(((((((.........)))))--------))...... ( -20.90)
>DroPse_CAF1 373593 96 - 1
GAUUCCCCCCCCUCCACGUUAUCUAUGUAUUUCCACUCCUCCAGCAUCUUCAUCUCCACCUCUUCGGGGAGCUUUUUAUGGCUCCUCG--------AUGGCUCU
...............((((.....))))..............................((...((((((((((......)))))))))--------).)).... ( -20.00)
>DroSec_CAF1 271999 89 - 1
AAAAAGGUUUUCCUUUUACU-UUCGACAGGUA-UGAAAGUC-UUUCGACUUGUCAGAAAAUUC--ACUUAGA-AG-CUCAGUAUCUUU--------AAAUAUGC
.((((((....))))))..(-((((((((((.-((((....-.))))))))))).))))....--.......-..-............--------........ ( -16.20)
>DroSim_CAF1 241485 95 - 1
AAAAAGGUUUUCCUUUUACUUUUCGACAGGUAAUGAAAGUCCUUUCAACUUGUCAGAAAAUUUCAACUUAGAGAG-CUCAGUAUCUUU--------AAAUAUGC
.((((((....))))))..((((((((((((..(((((....)))))))))))).))))).......(((((((.-.......)))))--------))...... ( -22.60)
>DroEre_CAF1 295500 103 - 1
AAAAAGGUUUUCCUUUUACUUUUCGACAGGUUACGAAAGUCCUCUUAACUUGUCUGCAGAUUUAAACUUGGCGUA-CUCUGCAUCUUUUCAUUCUAAUGAACUU
.((((((....)))))).......(((((((((.((......)).)))))))))((((((...............-.))))))....(((((....)))))... ( -23.19)
>DroYak_CAF1 280263 103 - 1
AAAAAGGUUUUCCUUUCACUUUUCGACAGGUUCUAAAAGUCCUUUUAACUUGUCGGGAAAUUUAAACUAAGAGGG-GUCGGUAUCUUUUCACUAUAAAAAACUC
.(((((((...((((((..((..((((((((..(((((....)))))))))))))..)).((......)))))))-).....)))))))............... ( -22.70)
>consensus
AAAAAGGUUUUCCUUUUACUUUUCGACAGGUAAUGAAAGUCCUUUCAACUUGUCAGAAAAUUUAAACUUAGAGAG_CUCAGUAUCUUU________AAAUACGC
.((((((....)))))).......(((((((..(((((....)))))))))))).................................................. ( -6.90 =  -8.90 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:53 2006