| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,882,566 – 2,882,666 |
| Length | 100 |
| Max. P | 0.587608 |
| Location | 2,882,566 – 2,882,666 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 78.49 |
| Mean single sequence MFE | -16.89 |
| Consensus MFE | -9.77 |
| Energy contribution | -9.37 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2882566 100 - 22224390 AGAGUCUUUCGGUAAAAGAAAAUCGGACGAAAAAGGGGCUUAAAUCGGAUGGGGACAAACAGAAAAAAAAAUAAAAAAAACGAUUGAAGUUCAAGUUGAG ....((.((((((........)))))).)).....((((((.(((((..((....)).......................))))).))))))........ ( -14.91) >DroSec_CAF1 269611 91 - 1 AGAGCCUUUCGGUAGAAGAAAACCGGACGAA-AGGGGGCUUAAAUCAGGUGAGGACAAACAGAAAAA--------AAAAACGAUUGAAGUUCAAGUUGAG .((((((((((((........))))))(...-.).))))))...((((.(..((((...........--------.............)))).).)))). ( -18.66) >DroSim_CAF1 239076 91 - 1 AGAGCCUUUCGGUAGAAGAAAACCGGACGAA-AGGGGGCUUAAAUCAGGUAAGGACAAACAGAAAAA--------AAAAAUGAUUGAAGUUCAAGUUGAG .((((((((((((........))))))(...-.).))))))...((((.(..((((...........--------.............)))).).)))). ( -17.26) >DroEre_CAF1 293054 87 - 1 A--GCCGUUUGGUAGAAGCAAACCGAACCAAAAGGGGGCUUAAAUCAGGUGAGGACAAACAGAA-----------CAAAACGAUUGAAGUUCAAGUUGAG .--..((..((((..((((...((.........))..))))..))))..))....(((...(((-----------(............))))...))).. ( -15.90) >DroYak_CAF1 277813 92 - 1 A--GCAAUUUGGUAGAAGCAAACCGAACGAAAAACGUAC-UAAAUCAAGUGGGGACGAU-UGAA----CGACGUAAAGAACGAUUGAAGUUCAAGUUGAC .--.(((((((((........)))((((...........-....((((.((....)).)-))).----((((((.....))).)))..)))))))))).. ( -17.70) >consensus AGAGCCUUUCGGUAGAAGAAAACCGGACGAAAAGGGGGCUUAAAUCAGGUGAGGACAAACAGAAAAA________AAAAACGAUUGAAGUUCAAGUUGAG .......((((((........))))))........((((((.((((...................................)))).))))))........ ( -9.77 = -9.37 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:51 2006