Locus 976

Sequence ID X_DroMel_CAF1
Location 2,812,703 – 2,812,794
Length 91
Max. P 0.802683
window1578

overview

Window 8

Location 2,812,703 – 2,812,794
Length 91
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 78.22
Mean single sequence MFE -31.30
Consensus MFE -17.75
Energy contribution -17.26
Covariance contribution -0.50
Combinations/Pair 1.21
Mean z-score -1.93
Structure conservation index 0.57
SVM decision value 0.62
SVM RNA-class probability 0.802683
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2812703 91 - 22224390
AUU---UUUUGAAUG-GGCUUUUGUGCCGGACAUGGC--UCGACACUGACGGGCUAAUUCAUGCCCGGACAUAAAGGCG---CCCAUCAUUCGGGUUUCC---
...---........(-((((((((((((((.((((((--(((.......))))).....)))).)))).)))))))))(---(((.......))))..))--- ( -32.90)
>DroPse_CAF1 278099 97 - 1
AUGGCACACUGAAUGGGGCUUUUGUGUUGGACAUGGACAUGGACACUGACGGGCUAAUUCAUGCUCAAGCAUAAAGGCGAAGGCCAUCAG--G-CCAUCC---
(((((...((((.(((.((((((((((((..(((....)))..)......((((........)))).))))))))))).....)))))))--)-))))..--- ( -31.50)
>DroSim_CAF1 173197 89 - 1
AUU---UUUUGAAUG-GGCUUUUGUGCCGGACAUGGC--UCGACACUGACGGGCUAAUUCAUGCCCGGACAUAAAGGCG---CCCAUCAU--GGGCUUCC---
...---........(-((((((((((((((.((((((--(((.......))))).....)))).)))).)))))))))(---(((.....--))))..))--- ( -36.00)
>DroYak_CAF1 207721 92 - 1
AUU---UUUUGAAUG-GGCUUUUGUGCCGGACAUGGC--UCGACACUGACGGGCUAAUUCAUGCCCGGACAUAAAGGCG---CCCAUCAU--GGCUUUCCCAC
...---.......((-((((((((((((((.((((((--(((.......))))).....)))).)))).)))))))))(---((......--)))....))). ( -34.50)
>DroAna_CAF1 332598 88 - 1
AUU---UUUUGAAUG-GACUUUUGUGCCGGACACGGC--AUGACACUGACGGGCUAAUUCAGGCUUCGACAUAAAGGCA--GGCUAGCUG--GAGUUU-----
...---........(-((((.(..(((((....))))--)..)......(.(((((...(..((((........)))).--.).))))).--))))))----- ( -21.40)
>DroPer_CAF1 299596 96 - 1
AUGGCACACUGAAUGGGGCUUUUGUGUUGGACAUGGACAUGGACACUGACGGGCUAAUUCAUGCUCAAGCAUAAAGGCGAAGGCCAUCAG--G-CCAUC----
(((((...((((.(((.((((((((((((..(((....)))..)......((((........)))).))))))))))).....)))))))--)-)))).---- ( -31.50)
>consensus
AUU___UUUUGAAUG_GGCUUUUGUGCCGGACAUGGC__UCGACACUGACGGGCUAAUUCAUGCCCGGACAUAAAGGCG___CCCAUCAG__GGCCUUCC___
.................(((((((((((((.(((((.......(......).......))))).)))).)))))))))......................... (-17.75 = -17.26 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:27 2006