| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,802,678 – 2,802,782 |
| Length | 104 |
| Max. P | 0.826596 |
| Location | 2,802,678 – 2,802,782 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 86.18 |
| Mean single sequence MFE | -29.70 |
| Consensus MFE | -23.25 |
| Energy contribution | -24.00 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.826596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2802678 104 - 22224390 --UU--ACCGCGCAAAGAUAAAGUAAGAAUGCAGUUUUGUUAUUCUUGAAGGGCUUUAUUUAUCGUUUAUCCUGCCGCAGGAAGUGUGGCAGUAGCAAGUUAGGCUAC --..--.((((((..(((((((((((((((((......).))))))).....)))))))))........(((((...))))).))))))..(((((.......))))) ( -28.50) >DroSec_CAF1 191128 106 - 1 --UUCACCCACGCAAAGAUAAAGUGAGAAAGCAGUUUUGGUACUCUUGAAGGGCUUUAUUUAUGGUUUAUCCUGCCGCAGGAAGUGUGGCAGUAGCAAGUUAGGCUAC --.....((((((..(((((((((....(((.(((......)))))).....)))))))))........(((((...))))).))))))..(((((.......))))) ( -28.30) >DroEre_CAF1 207534 108 - 1 CAAUCGCCCACACAAAGAUAAAGUAAGGAAGCAGUUUAAGUACUCUUGAAUGGCUUUAUUUAUGUUUUAUCCUGUCGCAGGAAGUGCGGCAGUAGCAAGUUAAGCUAC .....((((((..(((.(((((.....(((((.(((((((....))))))).))))).))))).)))..(((((...))))).))).))).(((((.......))))) ( -32.60) >DroYak_CAF1 197456 106 - 1 -AAUCAGCCACACAAAAAUAAAAUAAG-UAGCAGUUGAAGUACUCUUGAAUGGCUUUAUUUAUGGUUUAUCCUGUCGCAGGAAGUGCGGCAGUAGCAAGUUAGGCUAC -.....(((.(((..((((...(((((-((((.(((.(((....))).))).)))..)))))).)))).(((((...))))).))).))).(((((.......))))) ( -29.40) >consensus __AUCACCCACACAAAGAUAAAGUAAGAAAGCAGUUUAAGUACUCUUGAAGGGCUUUAUUUAUGGUUUAUCCUGCCGCAGGAAGUGCGGCAGUAGCAAGUUAGGCUAC ................((((((((((((((((..((((((....))))))..))))).)))))..))))))((((((((.....))))))))((((.......)))). (-23.25 = -24.00 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:24 2006