Locus 964

Sequence ID X_DroMel_CAF1
Location 2,741,575 – 2,741,680
Length 105
Max. P 0.656583
window1565

overview

Window 5

Location 2,741,575 – 2,741,680
Length 105
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 85.49
Mean single sequence MFE -39.42
Consensus MFE -29.18
Energy contribution -30.65
Covariance contribution 1.47
Combinations/Pair 1.10
Mean z-score -2.60
Structure conservation index 0.74
SVM decision value 0.26
SVM RNA-class probability 0.656583
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2741575 105 + 22224390
UUCUUUGCCGAUU---------UCUUCUCGCCACUGUCGUCCUCUUCGGACGAGGAAGAUCCACCCCGCUUCUUCCGGCGGCUCAACUCGGCACAUUGUUGCAGCAGCUUGGCG
......(((((..---------......((((....((((((.....))))))((((((..(.....)..))))))))))(((((((..........)))).)))...))))). ( -38.20)
>DroSec_CAF1 129683 105 + 1
UUCUUCGCCGACU---------UCUUCUCGCCACUGUCGUCCUCUUCGGACGAGGAAGAUCCGCCCCGCUUCUUCCGGCGGCUCAACUCGGCACAUUGUUGCAGCAGUUUGGCG
.....((((((((---------......((((....((((((.....))))))((((((..((...))..))))))))))(((((((..........)))).))))).)))))) ( -40.00)
>DroSim_CAF1 116498 105 + 1
UUCUUCGCCGACU---------UCUUCUCGCCACUGUCGUCCUCUUCGGACGAGGAAGAUCCGCCCCGCUUCUUCCGGCGGCUCAACUCGGCACAUUGUUGCAGCAGCUUGGCG
.....((((((((---------......((((....((((((.....))))))((((((..((...))..))))))))))(((((((..........)))).))))).)))))) ( -40.00)
>DroEre_CAF1 144886 105 + 1
UUCUUCGCCGAUU---------UCUUCUCGCCACUGUCGUCCUCUUCGGACGAGGAGGAUCCACCUCGCUUCUUCCUGCGGCUCAGCUCGGCACACUGCUGCAGCAGCUUGGCG
.....((((((..---------.......(((....((((((.....))))))((((((..(.....)..))))))...)))...(((((((.....)))).)))...)))))) ( -38.50)
>DroYak_CAF1 139068 105 + 1
UUCUUCGCCGACU---------UCUUCUCGCCACUGUCGUCCUCUUCGGACGAGGAAGAUCCACCUCGCUUCUUCCGGCGGCUCAGCUCGGCACAUUGUUCCAGCAGCUUGGCA
......(((((..---------......((((....((((((.....))))))((((((..(.....)..))))))))))(((..(((.((.((...)).))))))))))))). ( -37.80)
>DroPer_CAF1 215799 108 + 1
UUCCUGCCCGACUUGGAGGACUUUCCCUCGCCGCUGUCCU---CCUCGG---AGGAGGAUCCGCCGCGCUUCUUGCGUCUGCUCAGCUCGGCGCACUGCUGCAGCAGCUUCUCG
.((((.(((((...(((((((..............)))))---))))))---.).))))..(((((.(((....((....))..))).)))))..((((....))))....... ( -42.04)
>consensus
UUCUUCGCCGACU_________UCUUCUCGCCACUGUCGUCCUCUUCGGACGAGGAAGAUCCACCCCGCUUCUUCCGGCGGCUCAACUCGGCACAUUGUUGCAGCAGCUUGGCG
......(((((.................((((....((((((.....))))))((((((..(.....)..))))))))))(((((((..........)))).)))...))))). (-29.18 = -30.65 +   1.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:15 2006