| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,736,480 – 2,736,573 |
| Length | 93 |
| Max. P | 0.987654 |
| Location | 2,736,480 – 2,736,573 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 69.65 |
| Mean single sequence MFE | -34.97 |
| Consensus MFE | -15.71 |
| Energy contribution | -16.60 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.45 |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.987654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2736480 93 - 22224390 UGCAUUUGAGGGAAAGGAUGCCUCUUGCGGUGGCCGA--GGACAAUGGCCAAGUCAUAAACGGCGACUGCAGGAGGCAUUUAAGCCC-----C------A---CAUUGU------- .(((..((.(((...((((((((((((((((.((((.--.(((.........))).....)))).))))))))))))))))...)))-----)------)---...)))------- ( -45.20) >DroSec_CAF1 124748 93 - 1 UGCAUUUGAGGGAAAGGAUGGCUCUUGCGGUGGCCGA--GGACAAUGGCCAAGUCAUAAACGGCGACUGCAGGAGGCAUUUAAGCCC-----C------A---CAUCGU------- ......((.(((...(((((.((((((((((.((((.--.(((.........))).....)))).)))))))))).)))))...)))-----)------)---......------- ( -39.50) >DroEre_CAF1 139879 93 - 1 UGUAUGUGAGGGAGAUGCAGGCUUUUGCGGUUGCCGA--GGACAAUGGCCAAGUCAUAAGCGGCGAAUGCAGCAGGCAUUUAAGCCC-----C------A---CAACGU------- .((.((((.(((.(((((..(((...(((.((((((.--.(((.........))).....)))))).))))))..)))))....)))-----)------)---))))..------- ( -34.10) >DroYak_CAF1 134089 93 - 1 UGCAUUUGAGGGAAAGGAAGGCUUUUGCGGUGACCGA--GGACAAUGGCCAAGUCAUAAACGGUGACUGCAGCAGGCAUUUAAGCCC-----C------A---CAACGU------- .....(((.(((....(((.(((((((((((.((((.--.(((.........))).....)))).))))))).)))).)))....))-----)------.---)))...------- ( -29.40) >DroAna_CAF1 218140 93 - 1 UG---UUGGCCAAAAGGA----CUUUGCGGUGGCCGAGAGGACAAUGGCCAAGUCAUAAACUGCCACUGCAGGAGGCAUUUAGCCCAGAGUUG------A---UGUCCU------- ..---.........((((----(((((((((((((....)....(((((...))))).....))))))))))).(((.....)))........------.---.)))))------- ( -29.90) >DroPer_CAF1 210828 113 - 1 AGCAGUCAGGGCAGAGGAA-AUGCUUGCGGUGGCCCA--GGACAAUGGCCAACUCAUAAACUGUUCCCGCUGAAUCAACUGGAACGAGAGCUGCGGAGCAGACUGUACUAGUGGAA .((((((.(((((......-.)))))(((((((((..--.......))))..........(((((((.(.((...)).).))))).)).)))))......)))))).......... ( -31.70) >consensus UGCAUUUGAGGGAAAGGAAGGCUCUUGCGGUGGCCGA__GGACAAUGGCCAAGUCAUAAACGGCGACUGCAGGAGGCAUUUAAGCCC_____C______A___CAUCGU_______ ........................(((((((.((((....(((.........))).....)))).)))))))..(((......))).............................. (-15.71 = -16.60 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:12 2006