Locus 94

Sequence ID X_DroMel_CAF1
Location 376,439 – 376,548
Length 109
Max. P 0.546869
window124

overview

Window 4

Location 376,439 – 376,548
Length 109
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 91.01
Mean single sequence MFE -20.37
Consensus MFE -19.55
Energy contribution -20.00
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.26
Structure conservation index 0.96
SVM decision value 0.03
SVM RNA-class probability 0.546869
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 376439 109 - 22224390
UAUGCUGUAAUAUCCUUUAAUUGU------CCCGGGUCACAUUUUUCCGUAUCCCCACGCCCUAAAGCAUUUUCGUAUCCAUUAAUUAAACAAGUAAAGGUGUAGGCUUAUAUUA
...(((...(((.((((((.((((------...(((..((........))..)))...((......)).....................)))).))))))))).)))........ ( -17.50)
>DroSec_CAF1 10235 115 - 1
UAUGCUGUAAUAUCCUUUAAUUGUCCAAGUCCCGGGUCACAUUUUUCCGUAUCCUCCCGCCUUUAAGCAUUUUCGUAUACAUUAAUUAAUCAAUUAAAGGUGUAGGCAUAUAUUA
((((((...(((.((((((((((..........((((.((........))))))....((......))......................))))))))))))).))))))..... ( -21.80)
>DroSim_CAF1 9973 115 - 1
UAUGCUGUAAUAUCCUUUAAUUGUCCAAGUCCCGGGUCACAUUUUUCCGUAUCCUCACGCCUUAAAGCAUUUUCGUAUUUAUUAAUUAAUCAAUUAAAGGUGUAGGCAUAUAUUA
((((((...(((.((((((((((..........((((.((........))))))....((......))......................))))))))))))).))))))..... ( -21.80)
>consensus
UAUGCUGUAAUAUCCUUUAAUUGUCCAAGUCCCGGGUCACAUUUUUCCGUAUCCUCACGCCUUAAAGCAUUUUCGUAUACAUUAAUUAAUCAAUUAAAGGUGUAGGCAUAUAUUA
((((((...(((.((((((((((..........(((..((........))..)))...((......))......................))))))))))))).))))))..... (-19.55 = -20.00 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:06 2006