| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,619,335 – 2,619,425 |
| Length | 90 |
| Max. P | 0.963220 |
| Location | 2,619,335 – 2,619,425 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 78.37 |
| Mean single sequence MFE | -24.39 |
| Consensus MFE | -12.60 |
| Energy contribution | -12.73 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.73 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.963220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2619335 90 - 22224390 C-AGACCGCAAAAGUAUAUUUAAAAUACUGUAGACAAGUGUAAAAAGUGGCAAAACGUUACGUG---GUUGCAUUCAAUCGUUUUGUGGUUUG-G (-(((((((((((((((.......)))))...((..(((((((...(((((.....)))))...---.)))))))...))..)))))))))))-. ( -26.30) >DroPse_CAF1 19348 83 - 1 AGUGGCCCCAAGAGACUAUUUAAAAUACGGUAGACAAGUGCUGAAAGUGG--------UUCGCG---GUUGCAUUCAACUGUUUUGUGGUCUG-G ...((((.((((.((((((((......(((((......))))).))))))--------)).(((---((((....))))))))))).))))..-. ( -19.30) >DroGri_CAF1 38663 82 - 1 A-CCACCACAAAAAUGUAUUGAAAAUACCGUA---------AAAAAGUGGCAACA-GUUGCGCGAUUGUUGCAUGCAAACUUUUUGCGGUUGG-- .-(((..(((....))).........((((((---------((((.((.((((((-(((....)))))))))......)))))))))))))))-- ( -22.70) >DroSec_CAF1 27482 91 - 1 C-AGACCGCAAAAGUAUAUUUAAAAUACUGUAGACAAGUGUAAAAAGUGGCAAAACGUUACGUG---GUUGCAUUCAAUCGUUUUGUGGUUUGGG (-(((((((((((((((.......)))))...((..(((((((...(((((.....)))))...---.)))))))...))..))))))))))).. ( -26.30) >DroWil_CAF1 44423 89 - 1 G-CAACCACAAAAGUGUAUUUAAAAUACUGUAGACAAGUGUAAAAAGUAGCA-AACGUUACGCG---GUUGAAUUCAAUCGUUUUGUGGUUUG-G .-.(((((((((((((((.......((((....((....))....))))...-.....)))))(---((((....))))).))))))))))..-. ( -24.46) >DroAna_CAF1 38242 90 - 1 C-AGACCACAAAAGUAUAUUUAAAAUACUGUAGACAAGUGUAAAAAGUGACAAAACGUUACGCG---GUUGCAUUCAAUCGUUUUGUGGUUUG-G (-((((((((((............(((((.......))))).....(((((.....)))))(((---((((....))))))))))))))))))-. ( -27.30) >consensus C_AGACCACAAAAGUAUAUUUAAAAUACUGUAGACAAGUGUAAAAAGUGGCAAAACGUUACGCG___GUUGCAUUCAAUCGUUUUGUGGUUUG_G ..(((((((((((.................................(((((.....)))))......((((....))))..)))))))))))... (-12.60 = -12.73 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:42 2006