Locus 932

Sequence ID X_DroMel_CAF1
Location 2,602,157 – 2,602,252
Length 95
Max. P 0.779843
window1518

overview

Window 8

Location 2,602,157 – 2,602,252
Length 95
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 94.01
Mean single sequence MFE -11.69
Consensus MFE -10.19
Energy contribution -9.81
Covariance contribution -0.38
Combinations/Pair 1.18
Mean z-score -1.77
Structure conservation index 0.87
SVM decision value 0.55
SVM RNA-class probability 0.779843
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2602157 95 - 22224390
CUCAUCAAAAACUCAUAAAUUUGCAAUUUUCGACACAUGACAAAAUAAAUUGUAAACAAAGGAAAGCGCGAAAG---CCGAGAAAACUAACAAA--AAAC
...........(((.....((((((((((.................)))))))))).........(.((....)---)))))............--.... ( -13.13)
>DroSec_CAF1 10258 97 - 1
CUCAUCAAAAACUCAUAAAUUUGCAAUUUUCGACACAUGACAAAAUAAAUUGUAAACAAAGGAAAGCGCGAGAG---CCGAGAAAACUAACAAAAAAAAC
...........(((.....((((((((((.................))))))))))....((....(....)..---))))).................. ( -12.23)
>DroEre_CAF1 11156 97 - 1
CUCAUCAAAAACUCAUAAAUUUGCAAUUUUCGACACAUGACAAAAUAAAUUGUAAACAAAGAAGAGCGCGAAAGAUUCGGAGAAAACUAACAAA---AAC
...........(((.....(((((..(((((........((((......)))).......)))))..))))).......)))............---... ( -12.06)
>DroYak_CAF1 10598 94 - 1
CUCAUCAAAAACUCAUAAAUUUGCAAUUUUCGACACAUGACAAAAUAAAUUGUAAACAAAGGAAAGCGCGAGAG---CCAAGAAAACUAACAAA---AAC
....((......((.....((((((((((.................)))))))))).....))..(.((....)---))..))...........---... (  -9.33)
>consensus
CUCAUCAAAAACUCAUAAAUUUGCAAUUUUCGACACAUGACAAAAUAAAUUGUAAACAAAGGAAAGCGCGAAAG___CCGAGAAAACUAACAAA___AAC
...........(((.....(((((..(((((........((((......)))).......)))))..))))).......))).................. (-10.19 =  -9.81 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:31 2006