Locus 925

Sequence ID X_DroMel_CAF1
Location 2,568,542 – 2,568,644
Length 102
Max. P 0.730186
window1507

overview

Window 7

Location 2,568,542 – 2,568,644
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 79.08
Mean single sequence MFE -43.08
Consensus MFE -27.68
Energy contribution -29.55
Covariance contribution 1.87
Combinations/Pair 1.33
Mean z-score -1.58
Structure conservation index 0.64
SVM decision value 0.42
SVM RNA-class probability 0.730186
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2568542 102 + 22224390
UGUGGCAGCUGUGGCGGCGCAGGCACAGACGACGCUGGUGGCAGCGGAAUAGUCGGCAAUGUGGGCGCUGUCGGAGGAGCUGGCGCGGGUGUCGCUGUAGAU
((..((.((((((.(......).))))).)((((((.(((.((((.......((((((.((....)).))))))....)))).))).))))))))..))... ( -45.00)
>DroVir_CAF1 17799 93 + 1
UGUGGCAGCUGCGGCGGCGCUGGCGCAC------UUGGCGGCAACGGUAUGGCAGGCAAUGAGGGCGCUGUUGGCGGCGCUGGCACCGACGUCG---UGGCU
......(((..((((((.((..((((..------(..(((((..(..(((........)))..)..)))))..)..))))..)).))...))))---..))) ( -41.30)
>DroSec_CAF1 3361 102 + 1
UGAGGCAGCUGUGGCGGCGCAGGCACCGACGACGCUGGUGGCAGCGGAAUAGUCGGCAAUGUGGGCGCUGUCGGAGGAGCUGGAGCGGGCGCUAUUGAUGAU
...(((..((.(((((((((..((((((((..(((((....))))).....)))))...)))..))))))))).))..)))..(((....)))......... ( -43.20)
>DroSim_CAF1 3543 102 + 1
UGUGGCAGCUGUGGCGGCGCAGGCACCGACGACGCUGGUGGCAGCGGAAUAGUCGGCAAUGUGGGCGCUGUCGGAGGAGCUGGUGCGGGCGUUAUUGUGGAU
.(((.(((((.(((((((((..((((((((..(((((....))))).....)))))...)))..))))))))...).))))).)))................ ( -43.10)
>DroEre_CAF1 3436 102 + 1
UGUGGUAGUUGUGGCGGCGCAGGCACCGACGACGCUGGUGGCAACGGAAUAGUCGGUAAUGUUGGCGCGGUCGGAGGAGCCGGCGUUGCCGUCGCUAUGGAU
..(.(((((..(((((((((.(((.((..((((.(..(((.(((((..((.....))..))))).))))))))..)).))).)))))))))..))))).).. ( -47.30)
>DroYak_CAF1 3476 102 + 1
UGUGGAAUUUGUGGCGGCGCAGGCACCGACGACGCUGGUGGCAAUGGAAUAGUCGGUAAUGUGGGCGCUUGCGGUGGAGCAGGCGUUUUGGUCGCUAUGGUU
........(..((((((((((...((((((....(((.......)))....))))))..)))((((((((((......))))))))))..)))))))..).. ( -38.60)
>consensus
UGUGGCAGCUGUGGCGGCGCAGGCACCGACGACGCUGGUGGCAACGGAAUAGUCGGCAAUGUGGGCGCUGUCGGAGGAGCUGGCGCGGGCGUCGCUGUGGAU
.(((.(((((.(((((((((..((((((((..(((((....))))).....)))))...)))..)))))))))....))))).)))................ (-27.68 = -29.55 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:21 2006