Locus 914

Sequence ID X_DroMel_CAF1
Location 2,554,960 – 2,555,080
Length 120
Max. P 0.943576
window1492

overview

Window 2

Location 2,554,960 – 2,555,080
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.44
Mean single sequence MFE -52.55
Consensus MFE -44.33
Energy contribution -44.20
Covariance contribution -0.13
Combinations/Pair 1.18
Mean z-score -2.17
Structure conservation index 0.84
SVM decision value 1.34
SVM RNA-class probability 0.943576
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2554960 120 - 22224390
CGAUACGGAACAAGUUGCCGCUGGUGCAGUAGUGACCACCGGAGAUUUGGCGUCGUGGCCGUUGCUGCCUGCGCUGGAAUUGUGGGUCGUCGGUUGAACCGGCGAUUCCUCCUUGUCUUC
.((((.(((((((.......(..(((((((((..((..(((..(((.....))).)))..))..))).))))))..)..))))((((((((((.....)))))))))).))).))))... ( -47.70)
>DroSec_CAF1 10748 120 - 1
GGAUACGGAUAAAGUUGCUGCCGGUGCAGAAGUAACCACUGGAGAUUUGGCGUCGUUGCCGUUGCUGCCUGCGCUGGAAUUGGGGGUCGUCGGUUGAACCGGCGACUCCUCCUUGUCUUC
(((((.(((...........(((((((((.((((((..(....)....((((....))))))))))..))))))))).....(((((((((((.....)))))))))))))).))))).. ( -54.20)
>DroSim_CAF1 24321 120 - 1
GGAUACGGAUAAAGUUGCUGCCGGUGCAGAAGUAACCACUGGAGAUUUGGCGUCGUUGCCGUUGCUGCCUGCGCUGGAAUUGGGGGUCGUCGGUUGAACCGGCGACUCCUCCUUGUCUUC
(((((.(((...........(((((((((.((((((..(....)....((((....))))))))))..))))))))).....(((((((((((.....)))))))))))))).))))).. ( -54.20)
>DroYak_CAF1 10686 120 - 1
CGCUGUGGAUAAAGUGGCCGCCGGUGCAGUGGUGGCCACCGGAGAUUUAACAUCGUGACCGUUGCUGCCUGCGCUGGAAUUGUGGGUCGUCGGUUGGACCGGCGACUCCUCCUUGUCCUC
......((((((.((((((((((......)))))))))).((((..............(((.(((.....))).)))......((((((((((.....)))))))))))))))))))).. ( -54.10)
>consensus
CGAUACGGAUAAAGUUGCCGCCGGUGCAGAAGUAACCACCGGAGAUUUGGCGUCGUGGCCGUUGCUGCCUGCGCUGGAAUUGGGGGUCGUCGGUUGAACCGGCGACUCCUCCUUGUCUUC
.((((.(((...........((((((((((((((((....((.(((.....)))....))))))))).))))))))).....(((((((((((.....)))))))))))))).))))... (-44.33 = -44.20 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:07 2006