Locus 91

Sequence ID X_DroMel_CAF1
Location 359,996 – 360,107
Length 111
Max. P 0.560896
window121

overview

Window 1

Location 359,996 – 360,107
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.05
Mean single sequence MFE -30.37
Consensus MFE -19.38
Energy contribution -21.82
Covariance contribution 2.44
Combinations/Pair 1.04
Mean z-score -2.23
Structure conservation index 0.64
SVM decision value 0.05
SVM RNA-class probability 0.560896
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 359996 111 + 22224390
U----CUCAUUUAGAACCUUUAUUUGUUUACCGCGAGAGCUAGCAGAAAAUA--AACAAUGUUGGCUGUCG---UGUGGAUGAAUUGGUUUGGUUUUGUCUCGAAUCUUUUGUACAUACA
.----........(((((...(((..(((((.((((.((((((((.......--.....)))))))).)))---))))))..))).)))))(((((......)))))............. ( -30.20)
>DroSec_CAF1 6131 111 + 1
C----CUCAUUUAGAACCUUUAUUUGUUUACCGCGAGAGCUAGCAGAAAAUA--AACAAUGUUGGCUGUCG---UGUGGAUGAAUUGGUUUGGUUUUGUCUCGAAUCUUUUGUACAUACA
.----........(((((...(((..(((((.((((.((((((((.......--.....)))))))).)))---))))))..))).)))))(((((......)))))............. ( -30.20)
>DroSim_CAF1 3137 111 + 1
C----CUCAUUUAGAACCUUUAUUUGUUUACCGCGAGAGCUAGCAGAAAAUA--AACAAUGUUGGCUGUCG---UGUGGAUGAAUUGGUUUGGUUUUGUCUCGAAUCUUUUGUACAUACA
.----........(((((...(((..(((((.((((.((((((((.......--.....)))))))).)))---))))))..))).)))))(((((......)))))............. ( -30.20)
>DroEre_CAF1 6286 99 + 1
U----CUCAUUUAGAACCUUUAUUUGUUUACCGCGAGAGCUAGCAGAAAAUAAAAAUAAUGUUGGCUGUCGUU------------CGGU-----UUUGUCUCGAAUCUGUUGUACAUACA
.----......((.(((....(((((...(((((((.((((((((..............)))))))).)))..------------))))-----.......)))))..))).))...... ( -20.54)
>DroYak_CAF1 6304 117 + 1
UUGUGCUCAUUUGGAAGCUUCAUUUGUUUACCGCGAGAGCUAGCAGAAAAUA--AAUAAUGCUGGCUGUCGUCGUGUGGAUGAAUGGGUUUCG-UUUGUCUCGAAUCUUUUGUACAUACA
.(((((.......((((((.((((..((((((((((.((((((((.......--.....)))))))).))).)).)))))..))))))))))(-((((...))))).....))))).... ( -40.70)
>consensus
U____CUCAUUUAGAACCUUUAUUUGUUUACCGCGAGAGCUAGCAGAAAAUA__AACAAUGUUGGCUGUCG___UGUGGAUGAAUUGGUUUGGUUUUGUCUCGAAUCUUUUGUACAUACA
.............(((((...((((((((((..(((.((((((((..............)))))))).)))....)))))))))).)))))............................. (-19.38 = -21.82 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:01 2006