Locus 905

Sequence ID X_DroMel_CAF1
Location 2,516,129 – 2,516,249
Length 120
Max. P 0.706017
window1473

overview

Window 3

Location 2,516,129 – 2,516,249
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 94.96
Mean single sequence MFE -35.27
Consensus MFE -31.61
Energy contribution -31.50
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -1.98
Structure conservation index 0.90
SVM decision value 0.36
SVM RNA-class probability 0.706017
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2516129 120 - 22224390
UCCGCGAUCAUCGCAGUCGACAUCAUCAUCAUCACAGAUAUCCACCUCAUCGAUGCGAUCCUCCACAUCGAAUCCCUGGGUUCCGGUGCUGUUCGUACUCUUGUACUUAAUGCGGCUGCG
...........((((((((.(((......((.(((....(((((.....((((((.(......).)))))).....)))))....))).))...((((....))))...))))))))))) ( -34.30)
>DroEre_CAF1 15107 117 - 1
UCCACGAUCAUCGCAGUCGACGUCA---UCAUCACAGAUAUCCACCUCAUCGAUGCGAUCCUCGACAUCGAAUCCCUGGGUUCCGGUGCUGUUCGUACUCUUGUACUUAAUGCGGCUGCG
...........((((((((.(((..---.((.(((....(((((.....((((((((.....)).)))))).....)))))....))).))...((((....))))...))))))))))) ( -35.90)
>DroYak_CAF1 16361 117 - 1
UCCGCGAUCAUCGCAGUCGACGUCG---UCAUCACAGAUAUCCACCUCAUCGAUGCGGUCCUCCACAUCGAAUCCCUGAGUUCCGGUGCUGUUCGUACUCUUGUACUUAAUGCGGCUGCG
...........((((((((.(((..---.....((((.((((...((((((((((.((....)).)))))).....))))....))))))))..((((....))))...))))))))))) ( -35.60)
>consensus
UCCGCGAUCAUCGCAGUCGACGUCA___UCAUCACAGAUAUCCACCUCAUCGAUGCGAUCCUCCACAUCGAAUCCCUGGGUUCCGGUGCUGUUCGUACUCUUGUACUUAAUGCGGCUGCG
...........((((((((.(((..........((((.((((...((((((((((.(......).)))))).....))))....))))))))..((((....))))...))))))))))) (-31.61 = -31.50 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:49 2006