Locus 895

Sequence ID X_DroMel_CAF1
Location 2,509,806 – 2,509,912
Length 106
Max. P 0.859496
window1451

overview

Window 1

Location 2,509,806 – 2,509,912
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.55
Mean single sequence MFE -27.28
Consensus MFE -19.10
Energy contribution -19.22
Covariance contribution 0.12
Combinations/Pair 1.06
Mean z-score -2.97
Structure conservation index 0.70
SVM decision value 0.82
SVM RNA-class probability 0.859496
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2509806 106 + 22224390
GCCUU---GUUUAUUUGUUUACAUUAAGCAACAACCCAACAU---------UGUUGUUGUUUUGUCAUGUAAUUAUGAUAAUCAAGUGCAGUAAAAACGAAAACAAAGAAC--UUGGCAA
(((..---((((.(((((((.(...((((((((((.......---------.))))))))))(((((((....)))))))..................).)))))))))))--..))).. ( -28.60)
>DroSec_CAF1 8347 102 + 1
GCCUU---GUUUAUUUGUUUACAUUAAGCA---ACCCAACAU---------UGUUGUUGUU-UGUCAUGUAAUUAUGAUAAGCAAGUGCAGUAAAAACGAAAACAAAGAAC--UUGGCAA
(((..---((((.(((((((.(.....(((---...((((..---------.))))(((((-(((((((....)))))))))))).))).((....))).)))))))))))--..))).. ( -28.90)
>DroSim_CAF1 9233 102 + 1
GCCUU---GUUUAUUUGUUUACAUUAAGCA---ACCCAACAU---------UGUUGUUGUU-CGUCAUGUAAUUAUGAUAAUCAAGUGCAGUAAAAACGAAAACAAAGAAC--UUGGCAA
(((..---((((.(((((((.(.....(((---...(((((.---------...)))))..-.((((((....)))))).......))).((....))).)))))))))))--..))).. ( -24.20)
>DroEre_CAF1 8786 105 + 1
GCCUUGUUGUUUAUUUGUUUACAUUAAGCA---ACCGAACGU---------UGUUGUUGUU-UGUCAUGUAAUUAUGAUAAUCAAGUGCAGUAAAAACGAAAACAAAGGAC--UUGGCAA
(((..(((.(((.(((((((((....((((---((.....))---------)))).(((.(-(((((((....)))))))).))).....)))..))))))...))).)))--..))).. ( -26.10)
>DroYak_CAF1 9983 116 + 1
GCCUUGUUGUUUAUUUGUUUACAUUAAGCA---ACCGAACGUUCUUGUUGUUGUUGUUGUU-UGUCAUGUAAUUAUGAUAAUCAAGUGCAGUAAAAACGAAAACAAAGGACUCUUGGCAA
(((..((((((((..((....)).))))))---)).....(((((((((.(((((.(((((-(((((((....))))))))......))))....))))).))).))))))....))).. ( -28.60)
>consensus
GCCUU___GUUUAUUUGUUUACAUUAAGCA___ACCCAACAU_________UGUUGUUGUU_UGUCAUGUAAUUAUGAUAAUCAAGUGCAGUAAAAACGAAAACAAAGAAC__UUGGCAA
(((.....((((.(((((((.(.....(((......(((((..........)))))(((...(((((((....)))))))..))).))).((....))).)))))))))))....))).. (-19.10 = -19.22 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:28 2006