Locus 892

Sequence ID X_DroMel_CAF1
Location 2,508,120 – 2,508,211
Length 91
Max. P 0.539951
window1448

overview

Window 8

Location 2,508,120 – 2,508,211
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 88.81
Mean single sequence MFE -29.50
Consensus MFE -27.92
Energy contribution -27.37
Covariance contribution -0.55
Combinations/Pair 1.11
Mean z-score -1.14
Structure conservation index 0.95
SVM decision value 0.01
SVM RNA-class probability 0.539951
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2508120 91 + 22224390
CUGGUGGUCCGGUGGCAUCUGGUCUGAACCGAAUCUGACGCAACUUGACCCAAGUUGCUUGGCAUCGAUCUUCCAGUGCACUAGCACCUUG
.(((.((..(((((.((....(((.((......)).)))((((((((...)))))))).)).)))))..)).)))((((....)))).... ( -31.20)
>DroSec_CAF1 6675 86 + 1
CCA-----CCGGUGGCGUCUGGACUGAACCGAAUCUGACGCAACUUUGCCAAAGUUGCUUGGGAUCGAUCUUCCGGUGCACUAGCACCUAG
...-----..(((((((.(((((..((..(((.((..(.(((((((.....))))))))..)).))).)).)))))))).....))))... ( -27.80)
>DroSim_CAF1 7581 86 + 1
CCA-----CCGGUGGCGUCUGGUCUGAACCGAAUCUGACGCAACUUGGCCCAAGUUGCUUGGGAUCGAUCUUCCGGUGCACUAGCACCUAG
.((-----((((.((.(((.(((....)))((.((..(.((((((((...)))))))))..)).))))))).))))))..((((...)))) ( -29.50)
>consensus
CCA_____CCGGUGGCGUCUGGUCUGAACCGAAUCUGACGCAACUUGGCCCAAGUUGCUUGGGAUCGAUCUUCCGGUGCACUAGCACCUAG
..........(((((((.((((...((..(((.((..(.((((((((...)))))))))..)).))).))..))))))).....))))... (-27.92 = -27.37 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:26 2006