Locus 877

Sequence ID X_DroMel_CAF1
Location 2,458,659 – 2,458,779
Length 120
Max. P 0.594775
window1427

overview

Window 7

Location 2,458,659 – 2,458,779
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.22
Mean single sequence MFE -42.44
Consensus MFE -27.11
Energy contribution -26.70
Covariance contribution -0.41
Combinations/Pair 1.33
Mean z-score -1.86
Structure conservation index 0.64
SVM decision value 0.12
SVM RNA-class probability 0.594775
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2458659 120 - 22224390
GCUGGCCAGGCCGCUGGCUACAUACCCUAUCGCCAGUCCAAGCUGACGCGUCUGCUGCAGGACUCCCUGGGCGGUAAUUCCAUUACGCUGAUGAUUGCUUGCGUCAGUCCCGCCGACUAC
..((((..((..((((((.............))))))))..(((((((((.(((((.((((....)))))))))............((........)).)))))))))...))))..... ( -41.12)
>DroPse_CAF1 5955 120 - 1
GCCGGACAAGUUUCUGCUUAUAUACCAUACCGCCAGUCGAAGCUGACGCACCUGCUCAAGGACUCGCUGGGCGGCAACUCCAUCACAUUGAUGAUUGCCUGCGUCAGUCCGGCUGACUAC
(((((((.((((((.(((................))).))))))((((((...(((((.(......))))))(((((...((((.....)))).))))))))))).)))))))....... ( -45.49)
>DroEre_CAF1 18202 120 - 1
GCUCACCAAUCCACUGCCUAUAUACCCUACCGGCAGUCCAAGCUGACGCGUCUGCUGCAGGACUCCCUAGGCGGUAACUCCAUUACGUUGAUGAUUGCUUGCGUCAGCCCCGCUGACUAC
((....(((((.((((((((...........((.(((((.(((.((....)).)))...))))).))))))))))(((........)))...)))))...))((((((...))))))... ( -37.20)
>DroYak_CAF1 16610 120 - 1
GCUGGACAAACCGCCGGCUACAUACCCUAUCGGCAGUCCAAGCUGACGCGUCUGCUGCAGGACUCCCUAGGCGGUAACUCCAUUACGUUGAUGAUUGCCUGCGUCAGUCCCGCUGACUAU
((.((.(((((((((((........))....((.(((((.(((.((....)).)))...))))).))..)))))).....((((.....)))).))))).))(((((.....)))))... ( -41.40)
>DroAna_CAF1 17528 120 - 1
GCUGGCCAGGUUGCUGGCUUCGUCCGCUACCGAGAUUCAAAACUUACCCGCCUCCUUCAGGACUCGCUGGGCGGCAACUCCAUCACCUUGAUGAUAGCCUGCGUCAGUCCGGCCGACUAC
..(((((.(((.((.(((...))).)).)))............................((((((((.(((((....)..((((.....))))...)))))))..))))))))))..... ( -38.90)
>DroPer_CAF1 21088 120 - 1
GCCGGACAAGUUUCUGGUUAUAUACCAUACCGCCAGUCGAAGCUGACGCGCCUGCUCCAGGACUCGCUGGGCGGCAAUUCCAUCACAUUGAUGAUUGCCUGCGUCAGUCCGGCUGACUAC
(((((((.((((((((((..(((...)))..))))...))))))(((((....((.((((......))))))((((((..((((.....)))))))))).))))).)))))))....... ( -50.50)
>consensus
GCUGGACAAGCCGCUGGCUACAUACCCUACCGCCAGUCCAAGCUGACGCGCCUGCUGCAGGACUCCCUGGGCGGCAACUCCAUCACGUUGAUGAUUGCCUGCGUCAGUCCCGCUGACUAC
((((((......))))))................((((...((((((((((((.....((......))))))(((((...((((.....)))).))))).))))))))......)))).. (-27.11 = -26.70 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:06 2006