Locus 8695

Sequence ID X_DroMel_CAF1
Location 22,077,748 – 22,077,854
Length 106
Max. P 0.500000
window14293

overview

Window 3

Location 22,077,748 – 22,077,854
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 84.36
Mean single sequence MFE -31.96
Consensus MFE -20.28
Energy contribution -21.84
Covariance contribution 1.56
Combinations/Pair 1.12
Mean z-score -1.78
Structure conservation index 0.63
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22077748 106 + 22224390
AGGCCCCAAGGGCAAGUCGUCGAAGAUCAACGAUCCUCCACGUCGUGGCUCUUCACCGUCUGCUGGUGCAGAACCUACUCGCCAAAAACAAAGCGUUCAAAAUCAA
.(((...((((((..(.(((.((.((((...)))).)).))).)...)))))).....(((((....)))))........)))....................... ( -27.50)
>DroSec_CAF1 142433 103 + 1
AGGCCCCAAGGGCAGGUCGUCA---AUCAACGAUCUACCACGUCGCGGUUCUUCACCGUCCACUGGUGCAGAACCUAGUCGCCAAAAACAAAGCGGUCAAAACCAA
.(((..(...((.(((((((..---....))))))).)).......((((((.(((((.....))))).))))))..)..)))...........(((....))).. ( -33.40)
>DroSim_CAF1 114971 103 + 1
AGGCCCCAAGGGCAGGUCGUCA---AUCAACGAUCUACCACGUCGCGGUUCUUCACCGUCCACUGGUGCAGAACCUAGUCGCCAAAAACAAAGCGGUCAAAACCAA
.(((..(...((.(((((((..---....))))))).)).......((((((.(((((.....))))).))))))..)..)))...........(((....))).. ( -33.40)
>DroEre_CAF1 109589 103 + 1
CGGCUCCAAGGGCAGGUCGUCA---GCCAACGAUCGACCACGUCAGGGUUCCUCCCCGUCCACUAGCGCAGAGGCUAGUCGCCAAAGACAUGGUGGUCAAAGCCAA
.((((....((((.(((((((.---......)).)))))......(((......)))))))((((((......))))))(((((......))))).....)))).. ( -37.80)
>DroYak_CAF1 121962 103 + 1
UAGUUCCAAGGGCAAGUCGUCA---ACCAACGAUCGACCACGUCGAGGUUCUUCCCCGACCACUGGUGCAGAACCUAGUCGCCAAAAACACAGCGGUCAGGACCAA
..(.(((..(((.(((((((..---....))))(((((...)))))....))).)))((((.(((((((.((......)))).....)).))).)))).))).).. ( -27.70)
>consensus
AGGCCCCAAGGGCAGGUCGUCA___AUCAACGAUCGACCACGUCGCGGUUCUUCACCGUCCACUGGUGCAGAACCUAGUCGCCAAAAACAAAGCGGUCAAAACCAA
.(((.....((...((((((.........))))))..)).......((((((.(((((.....))))).)))))).....)))...........(((....))).. (-20.28 = -21.84 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:31 2006