Locus 8686

Sequence ID X_DroMel_CAF1
Location 22,050,594 – 22,050,701
Length 107
Max. P 0.810066
window14280

overview

Window 0

Location 22,050,594 – 22,050,701
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 75.29
Mean single sequence MFE -23.36
Consensus MFE -8.96
Energy contribution -8.84
Covariance contribution -0.12
Combinations/Pair 1.29
Mean z-score -1.95
Structure conservation index 0.38
SVM decision value 0.65
SVM RNA-class probability 0.810066
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22050594 107 + 22224390
GUCAAUUCAAUUGCUUCGCACUACAUAACAUUGACAGCGGCAAAGUUAGCAACUCCCGAUGCUGGUGCUAUGUACAUACAUACAUAUAUUUGUUAUUCAGUGCACUC
.................(((((..((((((....(((((....(((.....))).....)))))(((.(((((....)))))))).....))))))..))))).... ( -23.00)
>DroSec_CAF1 109269 83 + 1
GUCAUUUCAUUUGCUUCGCACUACAAAACAUUGACAGCCGCAAAGUUAGCAACUUCCGG------------------------AUGUAUUUGUUAUUUAGUGCACUA
.................((((((.(.((((...(((.(((..((((.....)))).)))------------------------.)))...)))).).)))))).... ( -19.10)
>DroSim_CAF1 88518 89 + 1
GUCGAUUCAAUUGCUUCGCACUACAAAACAUUGACAGCCGCAAAUGUAGCAACUCCCGAUGCU------------------ACAUAUAUUUGUUAUUUAGUGCACUA
.................((((((.(.(((((((.(....))))((((((((........))))------------------)))).....)))).).)))))).... ( -19.20)
>DroEre_CAF1 83551 103 + 1
AUCAAUUCAAUUGCUUCGCACUACAAAACAUUGACAGCGGUGAAGCUUGCAACUCCGCAUGCUGGUGCUGUG----UACAUAUACGUAUAUGGUACUCAGUGCACUC
.................(((((......(((((....))))).(((.(((......))).)))(((((((((----(((......)))))))))))).))))).... ( -29.30)
>DroYak_CAF1 92857 107 + 1
AUCAAUUCAAUUGCUUCGCACUACAAAACAUUGACAGCGGUAAAGCUUGCAACUCUUGAUGCUGGUGCUGAGCACAUACAUAUAUGUAUAUGUUAUUGAGUGCACUC
....((((((((((((.((((((.....(((..(.((..(((.....)))..)).)..))).)))))).)))))...((((((....)))))).)))))))...... ( -26.20)
>consensus
GUCAAUUCAAUUGCUUCGCACUACAAAACAUUGACAGCGGCAAAGCUAGCAACUCCCGAUGCUGGUGCU__G____UACAUACAUGUAUUUGUUAUUCAGUGCACUC
.................(((((......(((((..((..((.......))..))..)))))........................(((.....)))..))))).... ( -8.96 =  -8.84 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:19 2006