| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,938,029 – 21,938,149 |
| Length | 120 |
| Max. P | 0.539995 |
| Location | 21,938,029 – 21,938,149 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.91 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -19.84 |
| Energy contribution | -19.73 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21938029 120 + 22224390 CUUCAAUUUGCAUCGCUUGGUGGAAUUUCCCCAGCUUAAUCUGCUCAGUUCUUUGGCGAGGUAAGUUGUGCAUAAGCUAUGCUCACCUUUCACCCCUCCGGACCACCACUCGUAUUUCAA .............((..((((((.........(((.......)))......(((((.(.((((((.((.(((((...))))).)).)))..))).).)))))))))))..))........ ( -27.00) >DroEre_CAF1 70987 117 + 1 CUUCAAUUUGCAUCGCUUAGUGGAAUUUUCCCAGCUUAAUCUGCUCAGUUCUUUGGCGAGGUAAGUCGUGCAUAAGCUAUGUCCUCUCAUCUCCCCUCUGGACC---UCUUCCACUUCAA ..................(((((((.......(((.......)))..((((...((.(((((.((..(.(((((...))))))..)).))))).))...)))).---..))))))).... ( -24.50) >DroYak_CAF1 75879 97 + 1 CUUCGAUUUGCAUCGCUUAGUGGAAUUUCCACAGCUUAAUCUGCUCGGUUCUCUGGCGAGGUAAGUCGUGCAUAAGCUAUGGU--------------------C---CCUUCUAUUUAGA ...((((....))))((.(((((((...(((.((((((...(((.(((.((((....))))....))).))))))))).))).--------------------.---..))))))).)). ( -25.00) >consensus CUUCAAUUUGCAUCGCUUAGUGGAAUUUCCCCAGCUUAAUCUGCUCAGUUCUUUGGCGAGGUAAGUCGUGCAUAAGCUAUGCUC_C___UC_CCCCUC_GGACC___ACUUCUAUUUCAA ...((((((((.(((((....((((((.....(((.......))).))))))..))))).)))))))).((....))........................................... (-19.84 = -19.73 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:37 2006